Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00187 | ATGGCGGTGGAGCTTCTCACAGCCTTCACCAACGCTCAACTCTCTTCTCCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCTTCCGGTCTCGACACCCTCAAAAAGCTCATCACATTACTCTCTCACCACTCTCACCCTTCTAATCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCCGAAAGGCTATTTCTCTCCTTGGCCGCTCCCCTAGAACCGGCCACGCCCGATTCCGTCGTGCCCCTTTGGATTCCTCTAAAATCTACAACGCCACGCCTATTCAACAAATTCCTCCTCCCCTCGACCGCCTCGATTCCGCCACCACCATCAATTTCTCTTACTCCGCTGCTCCTAGTTCCTCCTTCTTGACCTCTCTTCCTGGTTCCGACTCTGAAATTAAACTCCAACATCAACCTTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGAAAGTGCGGTTCTGAGAATTTGGGCTCAGGGAAGTGCGCTGGATCTTCTGGTGGTCGTTGCCACTGCTCTAAGAAAAGAAAAATGAGATTGAAAAGAGTGGTGAGAGTGCCAGCTATAAGTTCAAAGAACGCTGATATTCCTCCTGATGATTATTCATGGAGGAAATACGGGCAAAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGTAGCAGTTTAAGAGGATGTCCAGCAAGAAAGCACGTTGAGAGAGCTTCAGATGATCCATCTATGTTAATAGTGACTTATGAAGGCGATCATAATCACTCTCAATCAGTTGCAGAAGCCTCAAGTCTCATCCTTGAATCTTGGTGA | 873 | 48.34 | MAVELLTAFTNAQLSSPMDQDSAVQEAASGLDTLKKLITLLSHHSHPSNLDSDCQAVANAAVSHFRKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPLDRLDSATTINFSYSAAPSSSFLTSLPGSDSEIKLQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCAGSSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3136522 | 3138757 | + | Lsi10G001870.1 | Lsi10g00187 | 671744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00187 | 290 | Pfam | WRKY DNA -binding domain | 219 | 275 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g00187 | 290 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 105 | 289 | IPR044810 | GO:0003700 | |
Lsi10g00187 | 290 | SUPERFAMILY | WRKY DNA-binding domain | 213 | 277 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g00187 | 290 | ProSiteProfiles | WRKY domain profile. | 212 | 278 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g00187 | 290 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 105 | 289 | - | - | |
Lsi10g00187 | 290 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 17 | 94 | - | - | |
Lsi10g00187 | 290 | Pfam | Plant zinc cluster domain | 169 | 215 | IPR018872 | - | |
Lsi10g00187 | 290 | Gene3D | WRKY domain | 201 | 278 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g00187 | 290 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 17 | 94 | IPR044810 | GO:0003700 | |
Lsi10g00187 | 290 | SMART | WRKY_cls | 217 | 277 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01528 | Lsi-Chr4:22895393 | Lsi10g00187 | Lsi-Chr10:3136522 | 5.47E-14 | dispersed | |
Lsi05g00976 | Lsi-Chr5:17003245 | Lsi10g00187 | Lsi-Chr10:3136522 | 1.16E-51 | dispersed | |
Lsi06g01220 | Lsi-Chr6:22581595 | Lsi10g00187 | Lsi-Chr10:3136522 | 2.74E-65 | dispersed | |
Lsi10g00187 | Lsi-Chr10:3136522 | Lsi01g00960 | Lsi-Chr1:7792775 | 8.18E-109 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26007 | PF03106 | WRKY | 2.50E-26 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00187 | - | - | bhj:120089490 | 547.74 |