Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00187 ATGGCGGTGGAGCTTCTCACAGCCTTCACCAACGCTCAACTCTCTTCTCCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCTTCCGGTCTCGACACCCTCAAAAAGCTCATCACATTACTCTCTCACCACTCTCACCCTTCTAATCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCCGAAAGGCTATTTCTCTCCTTGGCCGCTCCCCTAGAACCGGCCACGCCCGATTCCGTCGTGCCCCTTTGGATTCCTCTAAAATCTACAACGCCACGCCTATTCAACAAATTCCTCCTCCCCTCGACCGCCTCGATTCCGCCACCACCATCAATTTCTCTTACTCCGCTGCTCCTAGTTCCTCCTTCTTGACCTCTCTTCCTGGTTCCGACTCTGAAATTAAACTCCAACATCAACCTTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGAAAGTGCGGTTCTGAGAATTTGGGCTCAGGGAAGTGCGCTGGATCTTCTGGTGGTCGTTGCCACTGCTCTAAGAAAAGAAAAATGAGATTGAAAAGAGTGGTGAGAGTGCCAGCTATAAGTTCAAAGAACGCTGATATTCCTCCTGATGATTATTCATGGAGGAAATACGGGCAAAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGTAGCAGTTTAAGAGGATGTCCAGCAAGAAAGCACGTTGAGAGAGCTTCAGATGATCCATCTATGTTAATAGTGACTTATGAAGGCGATCATAATCACTCTCAATCAGTTGCAGAAGCCTCAAGTCTCATCCTTGAATCTTGGTGA 873 48.34 MAVELLTAFTNAQLSSPMDQDSAVQEAASGLDTLKKLITLLSHHSHPSNLDSDCQAVANAAVSHFRKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPLDRLDSATTINFSYSAAPSSSFLTSLPGSDSEIKLQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCAGSSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3136522 3138757 + Lsi10G001870.1 Lsi10g00187 671744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00187 290 Pfam WRKY DNA -binding domain 219 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi10g00187 290 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 105 289 IPR044810 GO:0003700
Lsi10g00187 290 SUPERFAMILY WRKY DNA-binding domain 213 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi10g00187 290 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi10g00187 290 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 105 289 - -
Lsi10g00187 290 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 17 94 - -
Lsi10g00187 290 Pfam Plant zinc cluster domain 169 215 IPR018872 -
Lsi10g00187 290 Gene3D WRKY domain 201 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi10g00187 290 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 94 IPR044810 GO:0003700
Lsi10g00187 290 SMART WRKY_cls 217 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01528 Lsi-Chr4:22895393 Lsi10g00187 Lsi-Chr10:3136522 5.47E-14 dispersed
Lsi05g00976 Lsi-Chr5:17003245 Lsi10g00187 Lsi-Chr10:3136522 1.16E-51 dispersed
Lsi06g01220 Lsi-Chr6:22581595 Lsi10g00187 Lsi-Chr10:3136522 2.74E-65 dispersed
Lsi10g00187 Lsi-Chr10:3136522 Lsi01g00960 Lsi-Chr1:7792775 8.18E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26007 PF03106 WRKY 2.50E-26 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00187 - - bhj:120089490 547.74