Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00232 ATGATTTCCATAACCCCATTAAGCGATGCCCGAAGATCCAATGTCTCCTCTGAATTCTCTCCCTCTCCGCCGCCTGCGACGGCCACAACCCATATTTTCCGATCTAAATTACCGGATATTACAATCCCCGACCATCTACCTCTTCACACTTACTGCTTTCAAAAACTCTCTGAAGTTTCCGACCGCCCCTGTTTGATCGTTGGCTCCACTGGAAAATCCTATTCCTACTCCGAAACCTATCTCTTCTCCCGGAAAGCCGCTGCCACTTTCTCTAAACTTGGAGTTAAGAAAGGCGATGTCATTATGATTCTCCTCCAGAACTCTCCCGAATTTGTTTTCTCTTTTATGGGTTCCTCCATGCTCGCCGCCGTCTCCACCACCGCAAATCCGTACTACACGGCGGCGGAGATTGCCAAGCAGTTGAAAGTCTCCGGTGCCAAATTCGTCGTTACTTACTCCCAATGCGTCGACAAGCTCAAAGAATCCGGCGTAGATCTCACTATTGTCACCGTCGATGACCCGCCGGAGAATTGTCTGAGCTTCTCCATGGTTTACGACGCCGATGAGAACGACGTCCCATTTGTCGAGATTGACACGAACGATGCCGTTTCGCTGCCGTTCTCTTCCGGCACGACCGGGCTCCCGAAGGGTGTGATTTTGACTCATAAGAACATGGTGTCGAGCGTGGCGCAACAGGTGGATGGAGAGAATCCAAACTTGTATTTAAGAAGGAACGACGTGGTTTTGTGCGTGCTACCAATGTTCCACATATTCTCTTTGAGTAGCATAGTTTTGATATCAATTAGGTCAGGGGCAACGCTACTTTTGATGGAGAAATTCGAGATCAAGGCATTACTACAACTAATAGAGAGGCACAAGGTGACAGTGGCAACGGTGGTGCCGCCACTTGTGGTGGCGCTAGTTAAGAACCCGATAGTGGCAGATTTCGACCTGAGCTCAATTAGATTGGTACTTTCCGGAGCGGCTCCATTACGAAAGGAGCTGGAGGAGGCTCTCATGCAGAGGCTTCCTCAAGCCATTTTTGGTCCCGTGCTGAGCATGTGCTCGGCTTTTGCAAAGGAGCCACCGATGCCAACAAAATCAGGGTCCTGCGGCAGAGTAGTGAGAAACTCGGAGCTTAAAGTCATCGACTCTCAAACTGGTGTTTCCCTAGGATACCTGAACGACCCGGTGTCCACGTCATTGACTGTCGACGAGGAGGGCTGGCTTCATACGGGTGACATTGGTTACATTGACGATGATGATGAAATTTTTATTGTTGACAGAGTGGCACCAGCAGAATTGGAGGCCCTTCTCGTAACTCATCCATCTATTGTGGATGCCGCTGTTGTCCCGCAAAATGATGATGTTGCTGGTGAAGTTCCAGTGGCTTTCGTAGTTCCATCAACTCATAATGAACTTACCGAGGACGTAGTAAAAGAATTCATAGCGAAGCAGGTTGTGTTCTACAAGAGATTGCAGAAAGTATACTTTGTACAAACAATTCCAAAATCACCCTCAGGAAAGATTTTGAGAAAGGAGCTGAAAGAAAAGCTCAGAGTCTGA 1566 48.4 MISITPLSDARRSNVSSEFSPSPPPATATTHIFRSKLPDITIPDHLPLHTYCFQKLSEVSDRPCLIVGSTGKSYSYSETYLFSRKAAATFSKLGVKKGDVIMILLQNSPEFVFSFMGSSMLAAVSTTANPYYTAAEIAKQLKVSGAKFVVTYSQCVDKLKESGVDLTIVTVDDPPENCLSFSMVYDADENDVPFVEIDTNDAVSLPFSSGTTGLPKGVILTHKNMVSSVAQQVDGENPNLYLRRNDVVLCVLPMFHIFSLSSIVLISIRSGATLLLMEKFEIKALLQLIERHKVTVATVVPPLVVALVKNPIVADFDLSSIRLVLSGAAPLRKELEEALMQRLPQAIFGPVLSMCSAFAKEPPMPTKSGSCGRVVRNSELKVIDSQTGVSLGYLNDPVSTSLTVDEEGWLHTGDIGYIDDDDEIFIVDRVAPAELEALLVTHPSIVDAAVVPQNDDVAGEVPVAFVVPSTHNELTEDVVKEFIAKQVVFYKRLQKVYFVQTIPKSPSGKILRKELKEKLRV 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3770732 3779777 - Lsi10G002320.1 Lsi10g00232 671789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00232 521 Pfam AMP-binding enzyme 59 430 IPR000873 -
Lsi10g00232 521 Gene3D - 26 428 IPR042099 -
Lsi10g00232 521 PANTHER 4-COUMARATE--COA LIGASE 3 31 518 - -
Lsi10g00232 521 MobiDBLite consensus disorder prediction 1 27 - -
Lsi10g00232 521 Pfam AMP-binding enzyme C-terminal domain 434 509 IPR025110 -
Lsi10g00232 521 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Lsi10g00232 521 SUPERFAMILY Acetyl-CoA synthetase-like 17 519 - -
Lsi10g00232 521 Gene3D - 429 520 IPR045851 -
Lsi10g00232 521 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 31 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02636 Lsi-Chr2:32784508 Lsi10g00232 Lsi-Chr10:3770732 7.54E-24 dispersed
Lsi06g01133 Lsi-Chr6:21580207 Lsi10g00232 Lsi-Chr10:3770732 7.45E-173 dispersed
Lsi10g00232 Lsi-Chr10:3770732 Lsi03g00010 Lsi-Chr3:165966 6.73E-111 dispersed
Lsi10g00232 Lsi-Chr10:3770732 Lsi11g00723 Lsi-Chr11:7842942 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00232 K01904 - csv:101221344 802.357