Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00233 ATGGCGATTATGGACACTCTCGTTGTCCCCATATCCTTGTCCGAACCTCCTCGCCCTTTACTCACCCGCAACACCAACGCCGTTGCTCAATGGAGGATTGGACCTGTTTCCCGCTTCTCGCCGCGTTCTTCTCTAATTCGGCTCAACCGTTTTCCCATTTGCTATAAGAAGCTTTCCTATCCTCGCTTCCGTCACTTCCGTTGCGCCGCCGAGGCCTCCGATCGCCGACACAGTCACCATCACGGCCATCATCACGGCCATCATGGCTGCCAGCACCATTCCAGTGGTGACGGTGATGGAGTGGAGCTGACTGGGGCTCAGAAGGCGTTTGTTCGATTTGCCGACGCTATTAGGTGGACGGACTTGGCGAATTATTTGAGGGAGCATCTACACTTGTGTTGCGGTTCCGCGGCTTTGTTTGTGACTGCGGCTGCGTGTCCTTACTTGGTGCCAAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCCGTTGCTTTCCCTTTAGTTGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATCTTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCTCTTGCAGCATTTGCATCAATATTTATGGGGAACCCCTTGGAAGGAGGACTACTTCTTGTGATGTTTAATATGGCTCATATTGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAGGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTTGTTCTTGATGTGAATGATGATAACCTTCCCGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCTTATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCAAGGTTGTGCTACGATCACTGTCGAGCACTTGACAGGAGAAGTCAAACCCTTGCAAATTAAGGTTGGGGAAAGAGTTCCAGGTGGAGCAAGAAACTTGGACGGTAGGATCATAGTGAAGGCTACAAAAGCGTGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTCAACGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTCTTATCCGTAGCTGTTGCCCTCATTGGACCATTATTGTTCAAGTGGCCATTTATATGTACACCAGGTTTCAGAGGATCAGTTTATAGAGCACTTGGGCTTATGGTAGCCGCATCACCATGTGCACTGGCAGCAGCACCATTGGCATATGCTATTGCGATAAGCTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACACGTGCTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACCGGAACATTGACTACAGGAGGACTTGTGTTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGAGATGAATCACATTTTGCTTCCTGTTGCATACCAAGCTGTGAAAAAGAAGCTCTTGCAGTGGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTAGTAGATCATAGTGTGGGGAAAGATCTTCCTTCTATTTCTGTTGACAGTTTTGAATATTTCCCTGGAAGAGGTCTCATCGCAACTCTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCTCTTGGTTCTGTGGATTTCATCACTTCCTTCTGCAAATCCGAAAATGAATCGAGGAAGATCAAGGATGCTGTTAGAACATCAACATATGGAAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTGATTCACCTTGAGGATCAACCTCGACCTGAAGTTGTAGATGCAATAGCAGAACTACGAGATAAGGGAAAACTCCGAGTTATGATGTTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTGGGCATAAATGAAGTTTACTACAGTCTTAAGCCAGAGGACAAACTTGCTCACGTGAAGGAAATTTCAAGGGAGATGGGGGGTGGCCTGATCATGGTAGGTGAAGGTATAAACGATGCACCTGCACTTGCTGCCGCTACTGTGGGAATAGTACTTGCCCATCGTGCAAGTGCTACTGCTACAGCTGTTGCAGACGTCCTGCTTCTTCAGGACAGTATTTCCGGTGTACCGTTCTGCATTGCCAAATCTCGTCAGACCACTTCACTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTCTAGCCTCTCTCCCATCCGTTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTACACGAGGGTGGCACTCTCCTGGTTTGCCTGAACTCCATACGTGCTCTAAATCAGCCCTCATGGTCATGGAAACAAGATTTTCAAAATCTGATATGCGATGCCAGATCTAAACTCAACACGACACCCGAAACTAGCTCTGGTACCATCCGAACTGCAACTTCATAG 2481 46.59 MAIMDTLVVPISLSEPPRPLLTRNTNAVAQWRIGPVSRFSPRSSLIRLNRFPICYKKLSYPRFRHFRCAAEASDRRHSHHHGHHHGHHGCQHHSSGDGDGVELTGAQKAFVRFADAIRWTDLANYLREHLHLCCGSAALFVTAAACPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDLSGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNMAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYQGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKAWEESTLSRIVQLTEEAQLNKPKLQRWLNEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSVYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDESHFASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVDSFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKDAVRTSTYGSEFVHAALSVDQKVTLIHLEDQPRPEVVDAIAELRDKGKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGVPFCIAKSRQTTSLVKQNVTLALSSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNQPSWSWKQDFQNLICDARSKLNTTPETSSGTIRTATS 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3799223 3809540 - Lsi10G002330.1 Lsi10g00233 671790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00233 826 SFLD p-type atpase 437 737 IPR044492 -
Lsi10g00233 826 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 189 786 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lsi10g00233 826 SUPERFAMILY HAD-like 453 784 IPR036412 -
Lsi10g00233 826 SUPERFAMILY Calcium ATPase, transduction domain A 263 348 IPR008250 -
Lsi10g00233 826 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Lsi10g00233 826 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 264 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi10g00233 826 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 588 764 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi10g00233 826 SFLD Haloacid Dehalogenase 437 737 - -
Lsi10g00233 826 Pfam haloacid dehalogenase-like hydrolase 453 697 - -
Lsi10g00233 826 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 63 812 - -
Lsi10g00233 826 SUPERFAMILY Calcium ATPase, transmembrane domain M 191 767 IPR023298 -
Lsi10g00233 826 Gene3D - 466 615 IPR023299 GO:0000166
Lsi10g00233 826 Gene3D - 448 735 IPR023214 -
Lsi10g00233 826 PRINTS P-type cation-transporting ATPase superfamily signature 607 618 - -
Lsi10g00233 826 PRINTS P-type cation-transporting ATPase superfamily signature 630 640 - -
Lsi10g00233 826 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Lsi10g00233 826 PRINTS P-type cation-transporting ATPase superfamily signature 684 703 - -
Lsi10g00233 826 PRINTS P-type cation-transporting ATPase superfamily signature 708 720 - -
Lsi10g00233 826 MobiDBLite consensus disorder prediction 77 98 - -
Lsi10g00233 826 Gene3D - 228 353 - -
Lsi10g00233 826 Pfam E1-E2 ATPase 262 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00181 Lsi-Chr10:2943534 Lsi10g00233 Lsi-Chr10:3799223 1.56E-12 dispersed
Lsi10g00233 Lsi-Chr10:3799223 Lsi11g00779 Lsi-Chr11:8958115 1.46E-58 dispersed
Lsi10g00233 Lsi-Chr10:3799223 Lsi06g01195 Lsi-Chr6:22295824 4.27E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00233 K01534 - csv:101221102 1447.18