Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00246 ATGGAAACATGGTTACTCGTGGTCATCATCTCCCTCTCCCTTTGTTTCCTCACAATCACCATTTTTAACAAATTCCGAAGCTCCACCAAGCTCCCACCAGGTCCTCCTTCAATCCCCATTCTCACCAATTTCCTATGGCTCCGCAGATCCCCACTCCAAGTCGAGTCTCTGTTGCGCAGTTTCATCGCCAAATATGGCCCCATCCTCACCCTCCCCATCGGCGCCAGCCCCGCCGTTTTCATCGCCGACGGCTCTATCGCCCACAAAGCCCTCCTCCAAAACGCCGCTCTCTTCGCCGACCGCCCACCTGCCCTTGCCATGAACAAGATCATCTCCACCCACCAATACAACCTCACCTCTGCTCCTTACGGCCCACTCTGGCGTCTCCTCCGCCGTAACCTCACTTCCCAAATCCTCCATCCTTCCCGTATTAGATCCTACGGTCGTGCTCGCAAGTGGGTTTTGGATATTCTTCTTAATCGTCTTATTTCTCACTCTGAATCGGGAAATCCCGTCTTCGTTGTGGATCATTTTCAGTACGCGATGTTCTGTTTGTTGGTGTTGATGTGCTTTGGGGATAAGCTTGAGGAATCCCAGATCAAGGAAATTGAGAACGTGCAGCGTGGGATGATTGTAAATCTTCGGCGTTTCATTGTCCTTAGTTTTTGGCCAAAATTGACCAACATTTTGTTTCGAAATCGCAAAGTGATGTTTTCTCAACTCAGAAGAAAGCAAGAGAATGTCCTAATCCCTCTAATCAATGCGAGAAAAAAGGTCAAGCAAGAAAGAGAAAACAGAGCAAAGAGAGCTGAAACTGAAGAATTCGTGGTGTCATATGTTGATACGCTGCTCGAATTGGAGCTGCCCGACGTAAAGAGAAAGCTTACTGATGACGAAATGGTCACTTTATGCTCTGAATTCCTCAACGCCGGCACAGATACCACCGCCACAGCATTACAATGGACAATGGCGAATTTAGTGAAATACCCAGAAATCCAAAACAAGCTTTTGGCAGAGATGAAAGAAGTAATGGGAGATGGAACAGGGGAGGAGGTGAAGGAAGAGGATTTGGGGAAACTTCCATATCTGAAAGCAGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGGGCATTTCGTGTTACCACACGCAGTGAAAGAAGACACGATATTGGAAAACTACGTGATACCAAAGAATGGGTCAGTAAATTTCATGGTGGCGGAGATGGGTTGGGATCCAAAAGTGTGGGAAGATCCGATGGAGTTTAAACCAGAGAGGTTCATGAACGAAGCGGCGGAGTTTGATGTAAGAGGGAGCAAAGAGATTAAGATGATGCCGTTCGGAGCAGGGAGGAGAATATGTCCAGCAATTGGTCTGGCAATGCTTCATTTGGAATATTTCATTGCGAATTTGGTATGGCGTTTTCAATGGAAGGCGGTGGAAGGAGACGGCGTCGATCTAGCGGAGAAGATAGAGTTCACCGTCCTCATGAAAAAGCCTCTCAAAGTTAACATATATTCCAGATTTTAA 1530 47.06 METWLLVVIISLSLCFLTITIFNKFRSSTKLPPGPPSIPILTNFLWLRRSPLQVESLLRSFIAKYGPILTLPIGASPAVFIADGSIAHKALLQNAALFADRPPALAMNKIISTHQYNLTSAPYGPLWRLLRRNLTSQILHPSRIRSYGRARKWVLDILLNRLISHSESGNPVFVVDHFQYAMFCLLVLMCFGDKLEESQIKEIENVQRGMIVNLRRFIVLSFWPKLTNILFRNRKVMFSQLRRKQENVLIPLINARKKVKQERENRAKRAETEEFVVSYVDTLLELELPDVKRKLTDDEMVTLCSEFLNAGTDTTATALQWTMANLVKYPEIQNKLLAEMKEVMGDGTGEEVKEEDLGKLPYLKAVVLEGLRRHPPGHFVLPHAVKEDTILENYVIPKNGSVNFMVAEMGWDPKVWEDPMEFKPERFMNEAAEFDVRGSKEIKMMPFGAGRRICPAIGLAMLHLEYFIANLVWRFQWKAVEGDGVDLAEKIEFTVLMKKPLKVNIYSRF 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4084478 4086007 + Lsi10G002460.1 Lsi10g00246 671803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00246 509 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 505 - -
Lsi10g00246 509 Gene3D Cytochrome P450 24 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Lsi10g00246 509 Pfam Cytochrome P450 32 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PANTHER CYTOCHROME P450 6 505 - -
Lsi10g00246 509 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 SUPERFAMILY Cytochrome P450 32 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00246 509 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00133 Lsi-Chr4:1537748 Lsi10g00246 Lsi-Chr10:4084478 8.82E-116 dispersed
Lsi09g01787 Lsi-Chr9:26611497 Lsi10g00246 Lsi-Chr10:4084478 0 dispersed
Lsi10g00220 Lsi-Chr10:3560152 Lsi10g00246 Lsi-Chr10:4084478 3.26E-154 dispersed
Lsi10g00246 Lsi-Chr10:4084478 Lsi10g00252 Lsi-Chr10:4108716 1.11E-139 dispersed
Lsi10g00251 Lsi-Chr10:4108410 Lsi10g00246 Lsi-Chr10:4084478 3.56E-47 dispersed
Lsi10g00246 Lsi-Chr10:4084478 Lsi10g00247 Lsi-Chr10:4091176 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00246 K24184 - csv:101204559 768.844