Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00247 ATGGAGACCTGGTTCATCTTCCTTATCTCCCTCTGCATCTGCTCTCTTCTCACCTCCATTTTTACCCATTTCCGAACCTCCACTAAGCTTCCACCAGGCCCTCCTTCAATTCCCATCATCACTAATCTCCTATGGCTCCGCCGATCCTCCCTTCAAATCGAGTCTCTTCTCCGGAGTTTCGTTGCAAAATATGGCCCTGTTCTCACCCTCCGCATCGGCCCCACCCCCACCATCTTCATCGCCGACCACTCAATTGCCCACAAGATCCTCGTCCAAAACGGCGCTCTCTTTGCTGACCGTCCACCGGCGCTACCCGTTGGCAAGGTCATCACCTCCAACCAACATAACGTCAACTCTGCCTCTTACGGCCCTCTTTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGTGTCAGATCCTACAGTCAAGCTCGCAAGTGGGTTTTGGATATTCTTCTCAATCGTCTTCAATCTCAGTCTCAATCTGGAAACCCCGTCTCAGTTGTCGAGAATTTTCAGTACGCCATGTTTTGTTTGTTGGTGTTGATGTGTTTTGGGGATAAGCTTGAGGAATCCCAGATCCGCGAAGTCGAGAACGTGGAGCGAGCGCTTATATTGAGTTTTCCGCGTTTCAACATTCTCAATTTCTGGCCAAAATTCACAAAGATTTTGTTTCGAAAACGCTGGGAGGCGTTTCTCCAATTAAGAAGGAACCTAGAGAAGGTCCTAATCCGTTTGATCGAAGCCCGAAGGAAAGCCAATCAAAACAGAGCAAACAGAAACGAAAATGAAGAAAGAGAAGAAGAAGAATTCGTGGTGTCATATGTTGATACACTGCTCGAATTGGAGCTCCCCGAGGAGAAGAGAAAGCTTACTGATGACGAAATGGTCACTTTATGCTCTGAATTCCTCAATGCCGGCACCGATACAACGTCGACGGCCTTGCAGTGGATAATGGCGAATTTAGTGAAATACCCAGAAATCCAAAACAAGCTTTTTGCAGAGATGAAAGGAGTAATGGGAGATGGAACAGGGGAAGAGGTGAAGGAAGAGGATTTGGGGAAACTTCCATATCTGAAAGCTGTAGTTTTAGAAGGATTAAGAAGACACCCACCAGCGCATTTCGTGCTGCCACACGCAGTGAAAGAAGATACAGAGTTGGGAAATTATGTGATACCAAAGAATGGGAGTGTAAATTTCATGGTGGCGGAGATGGGTCGAGATCCAAAAGTGTGGGAAGATCCAACGGTGTTTAAGCCGGAGAGGTTCATGAAGGGCGGGAAGGAAGAAGAGTTTGATGTAACAGGTAGCAAAGAGATAAAGATGATGCCATTCGGAGCAGGGAGGAGGATATGTCCAGGATGGGGTGTGGCGATTCTCCATTTGGAGTATTTCGTTGCTAATTTGGTTTGGCGGTTCGAATGGAAGGCGGTGGATGGAGACGAAGTTGATATGTCGGAGAAGGTAGAGCTTACCGTGGCGATGAAAAAGCCTCTGAAAGCCAAAATACATCCAAGAATTCATATTCAGAGTTGA 1551 47.58 METWFIFLISLCICSLLTSIFTHFRTSTKLPPGPPSIPIITNLLWLRRSSLQIESLLRSFVAKYGPVLTLRIGPTPTIFIADHSIAHKILVQNGALFADRPPALPVGKVITSNQHNVNSASYGPLWRLLRRNLTSQILHPSRVRSYSQARKWVLDILLNRLQSQSQSGNPVSVVENFQYAMFCLLVLMCFGDKLEESQIREVENVERALILSFPRFNILNFWPKFTKILFRKRWEAFLQLRRNLEKVLIRLIEARRKANQNRANRNENEEREEEEFVVSYVDTLLELELPEEKRKLTDDEMVTLCSEFLNAGTDTTSTALQWIMANLVKYPEIQNKLFAEMKGVMGDGTGEEVKEEDLGKLPYLKAVVLEGLRRHPPAHFVLPHAVKEDTELGNYVIPKNGSVNFMVAEMGRDPKVWEDPTVFKPERFMKGGKEEEFDVTGSKEIKMMPFGAGRRICPGWGVAILHLEYFVANLVWRFEWKAVDGDEVDMSEKVELTVAMKKPLKAKIHPRIHIQS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4091176 4092726 + Lsi10G002470.1 Lsi10g00247 671804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00247 516 PANTHER CYTOCHROME P450 4 509 - -
Lsi10g00247 516 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 Gene3D Cytochrome P450 24 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 SUPERFAMILY Cytochrome P450 31 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Lsi10g00247 516 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 Coils Coil 241 275 - -
Lsi10g00247 516 Pfam Cytochrome P450 31 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00247 516 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00247 Lsi-Chr10:4091176 Lsi10g00252 Lsi-Chr10:4108716 1.92E-139 dispersed
Lsi10g00246 Lsi-Chr10:4084478 Lsi10g00247 Lsi-Chr10:4091176 0 tandem
Lsi10g00247 Lsi-Chr10:4091176 Lsi10g00248 Lsi-Chr10:4098482 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00247 K24184 - csv:101220777 888.256