Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00248 ATGGAGATTTGGTTCATCGTCGTCGTCTCCCTCTGCATCTGCTCTCTTCTCACCTCCATTTTTACCCATTTCCGAACCTCCACAAAGCTTCCACCAGGCCCTCCTTCAATTCCCATCATCACTAATTTCCTATGGCTCCGCAGATCCCCTCTCCAAATTGAATCTCTTCTCCGCAGTTTCATCACAAAATACGGCCCCATCATCACTCTCCCCATCGGCACCCGCCCCGCCGTCTTCATCGCCGACCGTTCCATCGCCCACAAGGCCCTCATCCTAAATGGCGCTCTCTTCGCCGACCGTCCACCGGCTCTTCCCATCAACAAGATCGCTTCCAGCAACCAACACAACATCAACACCGCCCCTTACGGCCCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATTCTTCCCGTCTCAAGTCCTACGCCCGTGCTCGCAAGTGGGTTTTGGATATCCTTCTTAATCGCTTTCTCTCTCACTCTCAATCCGGAACTCCCGTTTGCGTTGTCGATCATTTTCAGTACGCCATGTTCTGTTTGTTGGTGTTGATGTGTTTTGGGGATAAGCTTGAGGAATCCCAGATTCATGAAATTGAAGACGTGCATCGAGCTATGCTGTTGAATTTTGGGCGTTTCAGCGTCCTCAATTTCTGGCCGAAATTGACCAAGATTTTCCTCCGAAAGCGCTGGGAGACGTTTCTCGAACTCAGAAGAAAGCAAGAGAAAGTCGTCATCTCTTTGATTGAATCAAGAAGGAAAGCCAACCAAAACAGAGAAAACGGAGTCGAAAATAAAGAAGAATTCGTGGTGTCATATGTTGACACACTGCTCGATTTGGAGCTTCCCGACGAGGACAATAGAAAGCTTACTGATGAGGAGATAGTCACCATATGCTCCGAATTCCTCAATGCCGGCACCGATACAACCTCCACGGCTCTGCAATGGATAATGGCGAATTTAGTGAAAAACCCAGAAATTCAGAACAAGCTTTTCGCAGAGATGAAAGAATTAATGGGAGATGGAACAGGGGAAGAGGTGAAGGAAGAGGATTTGGGGAAACTTCCATATCTGAAAACAGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGGGCATTTCGTGTTACCACACGCAGTGAAAGAAGACACGATATTGGAAAACTACGTGATACCAAAGAATGGGACAGTGAATTTCATGGTGGCGGAGATGGGTTGGGATCCAAAAGTGTGGGAAGATCCGATGGAGTTTAAGCCGGAGAGGTTCATGCAAGCCGGGGAAGGAGAAGAAGAAGGAACTGTATTTGATTTAACCGGGAGCAAAGAGATAAAAGATGATGCCGAGCAGGGAGGAGAATTTGTCCAGGATTTGGTCTGGCAATTCTTCATTTGGAGTATTTCATTGCGAATTTGGTATGGAGATTTGAATGGAAAGCGGTAA 1449 47.76 MEIWFIVVVSLCICSLLTSIFTHFRTSTKLPPGPPSIPIITNFLWLRRSPLQIESLLRSFITKYGPIITLPIGTRPAVFIADRSIAHKALILNGALFADRPPALPINKIASSNQHNINTAPYGPLWRLLRRNLTSQILHSSRLKSYARARKWVLDILLNRFLSHSQSGTPVCVVDHFQYAMFCLLVLMCFGDKLEESQIHEIEDVHRAMLLNFGRFSVLNFWPKLTKIFLRKRWETFLELRRKQEKVVISLIESRRKANQNRENGVENKEEFVVSYVDTLLDLELPDEDNRKLTDEEIVTICSEFLNAGTDTTSTALQWIMANLVKNPEIQNKLFAEMKELMGDGTGEEVKEEDLGKLPYLKTVVLEGLRRHPPGHFVLPHAVKEDTILENYVIPKNGTVNFMVAEMGWDPKVWEDPMEFKPERFMQAGEGEEEGTVFDLTGSKEIKDDAEQGGEFVQDLVWQFFIWSISLRIWYGDLNGKR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4098482 4099930 - Lsi10G002480.1 Lsi10g00248 671805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00248 482 Gene3D Cytochrome P450 24 452 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00248 482 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00248 482 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00248 482 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00248 482 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00248 482 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00248 482 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00248 482 PANTHER CYTOCHROME P450 4 447 - -
Lsi10g00248 482 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 447 - -
Lsi10g00248 482 SUPERFAMILY Cytochrome P450 31 429 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00248 482 Pfam Cytochrome P450 31 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00248 Lsi-Chr10:4098482 Lsi10g00252 Lsi-Chr10:4108716 3.28E-145 dispersed
Lsi10g00247 Lsi-Chr10:4091176 Lsi10g00248 Lsi-Chr10:4098482 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00248 K24184 - csv:101204559 737.258