Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00250 ATGGAGTCTCTGCTGCGAAGCTTCATCGCCAAGTACGGCCCTGTCCTCACCCTCCGCATCGGCCTCCGCCCCACCATTTTCATCGCCGATCACTCCATTGCCCACAAGGCCCTTGTCCTTAACGGCGCTCTCTTCGCCAACCGTCCACCGCCCCTTCCAGTCAGCAATGTCATCTCTAGCAATCAACACAACATCAGCTCTGCCTCTTACGGCCCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGTCTCAGGTCCTACGGTCAAGCTCGCAAGTGGGTTTTGGATATTCTTCTTAATCGCCTTAAATCTGAAACCACCCTCGTCTCTGCCATCGATCATTTTCGATACGCCATGTTGTGTTTGTTGGCGTTTATGTGTTTTGGGGATAAGCTTAACGAATCCCAAATCAACGGAATCAGGAATGTGGAGCAAGCAATGCAGTTGAATATTGGTCGCTTTAACGCTCTTAATTTCTTCCCTAAATTGACCAAGATTTTGTTAAGAAAACGTTGGGAGGAGTTTCTCCAATTAAGAAGCAACCAAGAGAAAGTCCTAATTCCTTTGATCGAAGCAAGAAGGAAGATCAATCAAAACAGAGCAAACAGAGGCGAAACTGAACAAGAATTCTTGGTTTCATACGTCGATACACTACTCGATTTGGAGCTTCCCAACGAGAAAAGAAAGCTTACTGATAGCGAAATGGTCACCATAGCCTCAGAGTTTATCAACGGAGGCACCGAGACCACATCCACAGCCTTGCAGTGGATAATGGCGAATTTAGTGAAATACCCAGAAATCCAAAACAAGCTTTTTGCAGAGATGAAAGGAGTAATGGGAGATGGAACAGGGGAAGAGGTGAAGGAAGAAGATTTGGGGAAACTTCCATATCTAAAAGCTGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGCCCATTTCGTGCTGCCACACGCAGTGAAAGAAGACACAATGTTGGGAAATTATGTGATACCAAAGAATGGGACTGTAAATTTCATGGTGGCGGAAATGGGTCGGGATCCGAAAGTGTGGGAAGATCCGATGGAGTTTAAGCCGGAGAGATTCATGAAAGGCGGCGAAGGAGAAGAAGGAGGAGGTGGGTTTGATATAACAGGGAGCAAAGAGATAAAGATGATGCCATTCGGAGCAGGGAGAAGAATGTGTCCTGGATTTGGTGTAGCGATTCTTCATTTGGAATATTTTGTTGCTAATTTGAGTGGAAGGCCGTCGATGGAGACGAAGTGGATCTGTCGGAGAAGGTAG 1305 46.97 MESLLRSFIAKYGPVLTLRIGLRPTIFIADHSIAHKALVLNGALFANRPPPLPVSNVISSNQHNISSASYGPLWRLLRRNLTSQILHPSRLRSYGQARKWVLDILLNRLKSETTLVSAIDHFRYAMLCLLAFMCFGDKLNESQINGIRNVEQAMQLNIGRFNALNFFPKLTKILLRKRWEEFLQLRSNQEKVLIPLIEARRKINQNRANRGETEQEFLVSYVDTLLDLELPNEKRKLTDSEMVTIASEFINGGTETTSTALQWIMANLVKYPEIQNKLFAEMKGVMGDGTGEEVKEEDLGKLPYLKAVVLEGLRRHPPAHFVLPHAVKEDTMLGNYVIPKNGTVNFMVAEMGRDPKVWEDPMEFKPERFMKGGEGEEGGGGFDITGSKEIKMMPFGAGRRMCPGFGVAILHLEYFVANLSGRPSMETKWICRRR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4102581 4103885 + Lsi10G002500.1 Lsi10g00250 671807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00250 434 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 3 419 - -
Lsi10g00250 434 Coils Coil 196 216 - -
Lsi10g00250 434 Pfam Cytochrome P450 3 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 402 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 261 287 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 241 258 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 306 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 392 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 125 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 9 28 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 347 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS E-class P450 group I signature 33 54 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 SUPERFAMILY Cytochrome P450 5 419 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 395 404 IPR017972 GO:0005506|GO:0016705
Lsi10g00250 434 PRINTS P450 superfamily signature 307 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS P450 superfamily signature 393 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS P450 superfamily signature 402 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PRINTS P450 superfamily signature 252 269 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00250 434 PANTHER CYTOCHROME P450 3 419 - -
Lsi10g00250 434 Gene3D Cytochrome P450 1 429 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00250 Lsi-Chr10:4102581 Lsi10g00252 Lsi-Chr10:4108716 3.59E-129 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00250 K24184 - csv:101205049 691.034