Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00252 ATGGAGACGTGGTTCATCATCGTCATCTCGATCTGTATCTGCTCTCTTCTGAACTCCATCTTTTCCCACTTCCGAAGCTCCACGAAACTCCCACCAGGCCCTCCTTCAATCCCTATCCTCACCAATCTCCAATGGCTCCGCAAATCCCCTCTTCAAATGGAGTCTCTGCTTCGGAGTTTCGTCGCAAAATATGGCCCCATCATCACTCTCCCCATCGGCACCCGCCCCGCCGTCTTCATCGCCGACCGCTCCATCGCCCACAAGGCCCTTGTCCTTAACGGCGCTCTCTTCGCCGACCGTCCACCGGCGCTACCCATCACCAAAATCGCCTCCAGCAACCAACACAACATCAACACCGCCCCTTACGGTCCACTCTGGCGTCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGAGTCAAATCCTACGCTCGTGCTCGTAAGTGGGTTTTGGATGTTCTTCTTAATCGCTTTCTCTCTCACTCTCAATCCGGAACTCCCGTTTGCGTTGTCGATCATTTTCAGTACGCTATGTTCTGTTTGTTGGTGTTGATGTGTTTTGGGGATAAACTTGACGAATCCCAGATCAAGGAAATTGAGAACGTACACCATACGATGTTGATAAATCTTAGGCGTTTTAATATCCTCAATTTCTGGCCTAAATTGACCAAGCTTTTCCTCCGAAAACGCTGGGAGACGTTTCTTCAACTCAAGAAGAATCGAGATGAAGTCCTGATTCCTTTGATCGAAGCAAGACGGAAGACCAAGGAAAACAGAGGAGGAGAAGAAAAACAGGACGAAGAATTCGTGGTTTCATATGTGGATACGCTCCTCGATTTGGAGCACCCGGAGGAGAAGAGAAAGCTTACAGATGAAGAAATGGTAGCCATAGCCTCTGAGTTTCTGAACGCCGGCACCGATACAACCTCCACGGCCCTGCAATGGATCATGGCGAATTTAGTGAAGAACCCAGAAATTCAAAGCAAGGTTTTGGCAGAGATGAAAGGAGTAATGGGAGATGGATCAAGGGAGGAGGTGAAGGAAGAGGATTTGGGGAAACTTCCATATCTGAAAGCGGTGGTTTTGGAAGGATTGAGAAGACACCCACCAGGGCATTTCGTGTTACCACACGCAGTGAAAGAAGATACAGAGTTGGAGAATTATGTGATACCAAAGAATGGGAGTGTGAATTTCATGGTGGCGGAGATGGGTTGGGATCCAGAAGTATGGGAAGATCCGATGGCGTTTAAGCCGGAGAGATTCATGAAGGGTGGGAAAGTAGAAGAAGAAGTGGGAGAGTTTGATATAACAGGGAGCAAAGAGATAAAGATGATGCCGTTCGGAGCAGGGAGGAGAATCTGTCCAGGATTTACTCTGGCAATTCTTCATTTGGAGTATTTCATAGCAAATTTGGTATGGAGATTTGAATGGAAGGCCGTAGAGGGAGATGATGTTGATCTGTCGGAGAAAGTGGAGTTCACCGTTGTGATGGAAAAGCCTCTTAAAGCCAACGGCACATTATATGGTAAATTAATGACTAATTACATGTTTAATTTTAAAAATCAAATAAGCCTGAAGTTCATCAACTCCGCCCCTTACGGCCCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGTATCAGATTCTACGGTCGTGCTCGCAAGTGGGTTTTGGATATTCTTCTTAATCGTCTTCTTTGTCACTCTGAATCGGGAAATCCCATCTTTGTTGTGGTTCATTTTCAGTACGCCATGTTCTGGTTGTTCAATTTGATGTGCTTTGGGGATAAACTTGACGAATCCCAAATCAAAGAAGTCGAGAGTGTGCAGCGTACAATGCTGTTAAAATTTAGACGTTTCGGTCTCCTCAATTTATCTCCTAAATTGACCAAGATTTTTCTTCCAAAGCGATGGGAGGAGTTTTTCCAACTAAGAAGAAACCAAGAGAGAGTAATAATCCCTCTAATCGAAGCAAGAAGGGAAGTCAAGAAAAATAGAGCAAACAGAGAAGGTGAAGAAGAAGATGAAGAATTCGTGTTGTCATATGTGGATGCACTCCTCGAATTACAACTCCCTGATGAGGATAACAGAAAGGTAACCGACGGCGAAATTGTCACGTTATGCTCGGAATTCCTCACCGGCGGCATCGATACAACATCCACAACCTTGCAATGGATAATGGCGAATTTAGTGAAACAACCAGAAATTCAACACAAGCTTTTTGCAGAGATGAAAGGACTAATGGGAGATGGAACAGGGGAGGAGGTGAAAGAAGAGTATTTGGGAAAACTTCCATATCTAAAAGCTGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGGGCATTTCTTACAAGCAAGAGGAGTGAAAGAGGATATACAATTTGAAAATTACTTGATACCCAAAAACGGGACTGTAAATTTCTTGGCGGCATAG 2466 45.7 METWFIIVISICICSLLNSIFSHFRSSTKLPPGPPSIPILTNLQWLRKSPLQMESLLRSFVAKYGPIITLPIGTRPAVFIADRSIAHKALVLNGALFADRPPALPITKIASSNQHNINTAPYGPLWRLLRRNLTSQILHPSRVKSYARARKWVLDVLLNRFLSHSQSGTPVCVVDHFQYAMFCLLVLMCFGDKLDESQIKEIENVHHTMLINLRRFNILNFWPKLTKLFLRKRWETFLQLKKNRDEVLIPLIEARRKTKENRGGEEKQDEEFVVSYVDTLLDLEHPEEKRKLTDEEMVAIASEFLNAGTDTTSTALQWIMANLVKNPEIQSKVLAEMKGVMGDGSREEVKEEDLGKLPYLKAVVLEGLRRHPPGHFVLPHAVKEDTELENYVIPKNGSVNFMVAEMGWDPEVWEDPMAFKPERFMKGGKVEEEVGEFDITGSKEIKMMPFGAGRRICPGFTLAILHLEYFIANLVWRFEWKAVEGDDVDLSEKVEFTVVMEKPLKANGTLYGKLMTNYMFNFKNQISLKFINSAPYGPLWRLLRRNLTSQILHPSRIRFYGRARKWVLDILLNRLLCHSESGNPIFVVVHFQYAMFWLFNLMCFGDKLDESQIKEVESVQRTMLLKFRRFGLLNLSPKLTKIFLPKRWEEFFQLRRNQERVIIPLIEARREVKKNRANREGEEEDEEFVLSYVDALLELQLPDEDNRKVTDGEIVTLCSEFLTGGIDTTSTTLQWIMANLVKQPEIQHKLFAEMKGLMGDGTGEEVKEEYLGKLPYLKAVVLEGLRRHPPGHFLQARGVKEDIQFENYLIPKNGTVNFLAA 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4108716 4115191 - Lsi10G002520.1 Lsi10g00252 671809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00252 821 Pfam Cytochrome P450 31 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 Pfam Cytochrome P450 536 817 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 Coils Coil 665 685 - -
Lsi10g00252 821 SUPERFAMILY Cytochrome P450 31 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PANTHER CYTOCHROME P450 4 508 - -
Lsi10g00252 821 PANTHER CYTOCHROME P450 531 821 - -
Lsi10g00252 821 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Lsi10g00252 821 SUPERFAMILY Cytochrome P450 531 818 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 Gene3D Cytochrome P450 24 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 Gene3D Cytochrome P450 509 820 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00252 821 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 508 - -
Lsi10g00252 821 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 531 821 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00659 Lsi-Chr8:14933121 Lsi10g00252 Lsi-Chr10:4108716 1.06E-45 dispersed
Lsi09g00055 Lsi-Chr9:458086 Lsi10g00252 Lsi-Chr10:4108716 3.59E-113 dispersed
Lsi10g00246 Lsi-Chr10:4084478 Lsi10g00252 Lsi-Chr10:4108716 1.11E-139 dispersed
Lsi10g00247 Lsi-Chr10:4091176 Lsi10g00252 Lsi-Chr10:4108716 1.92E-139 dispersed
Lsi10g00248 Lsi-Chr10:4098482 Lsi10g00252 Lsi-Chr10:4108716 3.28E-145 dispersed
Lsi10g00250 Lsi-Chr10:4102581 Lsi10g00252 Lsi-Chr10:4108716 3.59E-129 proximal
Lsi10g00251 Lsi-Chr10:4108410 Lsi10g00252 Lsi-Chr10:4108716 3.34E-43 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00252 K24184 - csv:101204559 932.939