Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00252 | ATGGAGACGTGGTTCATCATCGTCATCTCGATCTGTATCTGCTCTCTTCTGAACTCCATCTTTTCCCACTTCCGAAGCTCCACGAAACTCCCACCAGGCCCTCCTTCAATCCCTATCCTCACCAATCTCCAATGGCTCCGCAAATCCCCTCTTCAAATGGAGTCTCTGCTTCGGAGTTTCGTCGCAAAATATGGCCCCATCATCACTCTCCCCATCGGCACCCGCCCCGCCGTCTTCATCGCCGACCGCTCCATCGCCCACAAGGCCCTTGTCCTTAACGGCGCTCTCTTCGCCGACCGTCCACCGGCGCTACCCATCACCAAAATCGCCTCCAGCAACCAACACAACATCAACACCGCCCCTTACGGTCCACTCTGGCGTCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGAGTCAAATCCTACGCTCGTGCTCGTAAGTGGGTTTTGGATGTTCTTCTTAATCGCTTTCTCTCTCACTCTCAATCCGGAACTCCCGTTTGCGTTGTCGATCATTTTCAGTACGCTATGTTCTGTTTGTTGGTGTTGATGTGTTTTGGGGATAAACTTGACGAATCCCAGATCAAGGAAATTGAGAACGTACACCATACGATGTTGATAAATCTTAGGCGTTTTAATATCCTCAATTTCTGGCCTAAATTGACCAAGCTTTTCCTCCGAAAACGCTGGGAGACGTTTCTTCAACTCAAGAAGAATCGAGATGAAGTCCTGATTCCTTTGATCGAAGCAAGACGGAAGACCAAGGAAAACAGAGGAGGAGAAGAAAAACAGGACGAAGAATTCGTGGTTTCATATGTGGATACGCTCCTCGATTTGGAGCACCCGGAGGAGAAGAGAAAGCTTACAGATGAAGAAATGGTAGCCATAGCCTCTGAGTTTCTGAACGCCGGCACCGATACAACCTCCACGGCCCTGCAATGGATCATGGCGAATTTAGTGAAGAACCCAGAAATTCAAAGCAAGGTTTTGGCAGAGATGAAAGGAGTAATGGGAGATGGATCAAGGGAGGAGGTGAAGGAAGAGGATTTGGGGAAACTTCCATATCTGAAAGCGGTGGTTTTGGAAGGATTGAGAAGACACCCACCAGGGCATTTCGTGTTACCACACGCAGTGAAAGAAGATACAGAGTTGGAGAATTATGTGATACCAAAGAATGGGAGTGTGAATTTCATGGTGGCGGAGATGGGTTGGGATCCAGAAGTATGGGAAGATCCGATGGCGTTTAAGCCGGAGAGATTCATGAAGGGTGGGAAAGTAGAAGAAGAAGTGGGAGAGTTTGATATAACAGGGAGCAAAGAGATAAAGATGATGCCGTTCGGAGCAGGGAGGAGAATCTGTCCAGGATTTACTCTGGCAATTCTTCATTTGGAGTATTTCATAGCAAATTTGGTATGGAGATTTGAATGGAAGGCCGTAGAGGGAGATGATGTTGATCTGTCGGAGAAAGTGGAGTTCACCGTTGTGATGGAAAAGCCTCTTAAAGCCAACGGCACATTATATGGTAAATTAATGACTAATTACATGTTTAATTTTAAAAATCAAATAAGCCTGAAGTTCATCAACTCCGCCCCTTACGGCCCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCCCGTATCAGATTCTACGGTCGTGCTCGCAAGTGGGTTTTGGATATTCTTCTTAATCGTCTTCTTTGTCACTCTGAATCGGGAAATCCCATCTTTGTTGTGGTTCATTTTCAGTACGCCATGTTCTGGTTGTTCAATTTGATGTGCTTTGGGGATAAACTTGACGAATCCCAAATCAAAGAAGTCGAGAGTGTGCAGCGTACAATGCTGTTAAAATTTAGACGTTTCGGTCTCCTCAATTTATCTCCTAAATTGACCAAGATTTTTCTTCCAAAGCGATGGGAGGAGTTTTTCCAACTAAGAAGAAACCAAGAGAGAGTAATAATCCCTCTAATCGAAGCAAGAAGGGAAGTCAAGAAAAATAGAGCAAACAGAGAAGGTGAAGAAGAAGATGAAGAATTCGTGTTGTCATATGTGGATGCACTCCTCGAATTACAACTCCCTGATGAGGATAACAGAAAGGTAACCGACGGCGAAATTGTCACGTTATGCTCGGAATTCCTCACCGGCGGCATCGATACAACATCCACAACCTTGCAATGGATAATGGCGAATTTAGTGAAACAACCAGAAATTCAACACAAGCTTTTTGCAGAGATGAAAGGACTAATGGGAGATGGAACAGGGGAGGAGGTGAAAGAAGAGTATTTGGGAAAACTTCCATATCTAAAAGCTGTGGTTTTAGAAGGATTAAGAAGACACCCACCAGGGCATTTCTTACAAGCAAGAGGAGTGAAAGAGGATATACAATTTGAAAATTACTTGATACCCAAAAACGGGACTGTAAATTTCTTGGCGGCATAG | 2466 | 45.7 | METWFIIVISICICSLLNSIFSHFRSSTKLPPGPPSIPILTNLQWLRKSPLQMESLLRSFVAKYGPIITLPIGTRPAVFIADRSIAHKALVLNGALFADRPPALPITKIASSNQHNINTAPYGPLWRLLRRNLTSQILHPSRVKSYARARKWVLDVLLNRFLSHSQSGTPVCVVDHFQYAMFCLLVLMCFGDKLDESQIKEIENVHHTMLINLRRFNILNFWPKLTKLFLRKRWETFLQLKKNRDEVLIPLIEARRKTKENRGGEEKQDEEFVVSYVDTLLDLEHPEEKRKLTDEEMVAIASEFLNAGTDTTSTALQWIMANLVKNPEIQSKVLAEMKGVMGDGSREEVKEEDLGKLPYLKAVVLEGLRRHPPGHFVLPHAVKEDTELENYVIPKNGSVNFMVAEMGWDPEVWEDPMAFKPERFMKGGKVEEEVGEFDITGSKEIKMMPFGAGRRICPGFTLAILHLEYFIANLVWRFEWKAVEGDDVDLSEKVEFTVVMEKPLKANGTLYGKLMTNYMFNFKNQISLKFINSAPYGPLWRLLRRNLTSQILHPSRIRFYGRARKWVLDILLNRLLCHSESGNPIFVVVHFQYAMFWLFNLMCFGDKLDESQIKEVESVQRTMLLKFRRFGLLNLSPKLTKIFLPKRWEEFFQLRRNQERVIIPLIEARREVKKNRANREGEEEDEEFVLSYVDALLELQLPDEDNRKVTDGEIVTLCSEFLTGGIDTTSTTLQWIMANLVKQPEIQHKLFAEMKGLMGDGTGEEVKEEYLGKLPYLKAVVLEGLRRHPPGHFLQARGVKEDIQFENYLIPKNGTVNFLAA | 821 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4108716 | 4115191 | - | Lsi10G002520.1 | Lsi10g00252 | 671809 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00252 | 821 | Pfam | Cytochrome P450 | 31 | 501 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | Pfam | Cytochrome P450 | 536 | 817 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | Coils | Coil | 665 | 685 | - | - | |
Lsi10g00252 | 821 | SUPERFAMILY | Cytochrome P450 | 31 | 506 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PANTHER | CYTOCHROME P450 | 4 | 508 | - | - | |
Lsi10g00252 | 821 | PANTHER | CYTOCHROME P450 | 531 | 821 | - | - | |
Lsi10g00252 | 821 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 450 | 459 | IPR017972 | GO:0005506|GO:0016705 | |
Lsi10g00252 | 821 | SUPERFAMILY | Cytochrome P450 | 531 | 818 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 361 | 379 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 180 | 198 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 316 | 342 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 457 | 480 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 85 | 106 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 296 | 313 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 402 | 426 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | E-class P450 group I signature | 447 | 457 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | Gene3D | Cytochrome P450 | 24 | 508 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | Gene3D | Cytochrome P450 | 509 | 820 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | P450 superfamily signature | 307 | 324 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | P450 superfamily signature | 457 | 468 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | P450 superfamily signature | 362 | 373 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PRINTS | P450 superfamily signature | 448 | 457 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi10g00252 | 821 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 4 | 508 | - | - | |
Lsi10g00252 | 821 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 531 | 821 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g00659 | Lsi-Chr8:14933121 | Lsi10g00252 | Lsi-Chr10:4108716 | 1.06E-45 | dispersed | |
Lsi09g00055 | Lsi-Chr9:458086 | Lsi10g00252 | Lsi-Chr10:4108716 | 3.59E-113 | dispersed | |
Lsi10g00246 | Lsi-Chr10:4084478 | Lsi10g00252 | Lsi-Chr10:4108716 | 1.11E-139 | dispersed | |
Lsi10g00247 | Lsi-Chr10:4091176 | Lsi10g00252 | Lsi-Chr10:4108716 | 1.92E-139 | dispersed | |
Lsi10g00248 | Lsi-Chr10:4098482 | Lsi10g00252 | Lsi-Chr10:4108716 | 3.28E-145 | dispersed | |
Lsi10g00250 | Lsi-Chr10:4102581 | Lsi10g00252 | Lsi-Chr10:4108716 | 3.59E-129 | proximal | |
Lsi10g00251 | Lsi-Chr10:4108410 | Lsi10g00252 | Lsi-Chr10:4108716 | 3.34E-43 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00252 | K24184 | - | csv:101204559 | 932.939 |