Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00268 ATGCTAACTCATCTCTTTCCCCTTCTTCTTCTTCCCTATCTTCCTCTGTTAGTTGACTCAGTTTCTTTCAAAATTGATCAAATTGAACCCAATGAAAACCGTTTACTTTACCAAGGAGATGCTGTTCCTAATAATGGAGCAGTTCAGTTTAGTGATCCTGCATATTCCTGTCTTGTTGGTCAAGCTATTTACAAAGATGCTATCCCAATTTGGGACTCTGAAACAGGAAAACTTACTGATTTCACAACCCATTTCTCCTTCACCATCGATACACAAAATGCTTTACACTATGGAAATGGGGTTGCTTTTTTCTTGGCTCCAGCTGGGTTTCAAATCCCTCCAAACTCAGCTGGTGGGTATCTTGGCCTTTTTAATAAGACCTATATTGATTCATCCATAAACCAAATTGTTCACGTTGAGTTTGATTCTTACTCTAATGAATGGGATCCTAAATTTGAACATGTGGGTATCAACATTAACTCTGTTTCTTCTTCTAATTTCACAAAGTGGAATGTCAGCTTACATAGTTTGGACACTGTTGATGTGTTTATCTCCTATGATTCAACCACTAAATACTTGAGTGTCTCGTGGAATTATGAAAAGACAGCCACTTCTCTTGAAAATACAACTTTGAGTTACCAGATTGATCTCATGAAGATTCTTCCTCAATGGGCAACAGTAGGATTTTCAGCTGCAACAGGGGCCTACCTAGAGAGACATTTGCTATTTTCTTGGGAGTTCAACTCTAGCTTGGAAATGAAACAACCAGCTAGTACTGAAAAGAATGGGAAGAAAGTTGATGTAATTGTGGGTGTGACTGTTTCAATAGGAGTTTCAATTCTCATGGCAATTGTAGCCTTTGTAGTACTTTGGAGATTGAAACAAAAGAAAAGAAAATCAGAAGAAGAAAACGCTGAGGAGGTAAACTTGACATCCATTAATGATGATTTGGAAAGAGGGGCTGGACCAAGAAGGTTTTCTCATAAACTTCTTGCCATGGCTACCAACAACTTCTCCAATGAAAGGAAGCTTGGTCAAGGAGGATTTGGAGCAGTGTACAGAGGGTACATACCAGACATAGATTTGACAGTGGCTGTGAAGAAAATCTCAAGGGGTTCAAGACAGGGGAGAAAAGAGTATATAACTGAAGTGAAGATCATTAGCCGGCTTCGCCATCGAAATTTGGTGCAACTCATTGGTTGGTGTCATGATAAGGGTGAGTTCTTGTTGGTTTATGAATTCATGCCTAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAGCCCCTCTTGGTTGGGCTGTGAGATATAAGATTGCTTTAGGTTTAGCCTCTGCTTTGCTATATCTTCATGAAGAAGGGGAACAGTGTGTGGTTCATAGAGATATTAAATCTAGTAATGTCATGTTAGATTCAAACTTCAATGTCAAGCTTGGGGATTTTGGGCTAGCTCGATTAATGGACCATGAGTTGGGAGCTCAAACAACTGGTTTGGTTGGAACTTTGGGTTACTTAGCTCCTGAATACATAAGCACAGGCAGAGCTAGTAAAGAATCTGATGTGTTTAGTTTTGGGGTTGTTGCTTTGGAGATTGCCACTGGAAGGATGTCAAGAACCTCCATGGAAATTGAATCTCATAAGGGTTTGGTGGAATGGGTTTGGGATCTTTATGGGAGTGGACAATTGATTGATGGCATGGATGAGAAATTGAAATCTGATTGTGACAAAAAACAAGTGGAATGTTTGATGCTTGTTGGATTATGGAGTGCTTATCCAGACCCTAATCTTAGACCTTCCATAAAACAAGCAATTCAAATTGATTCAGTCCACATAGGAATCTGCTTCGTATCTCTTTCCACTTCTAATGCTGTGCACAATGAACACAATAAGAACACCTTGATAATCTATTGTCATATTGCAGTTTCCTAA 1929 39.29 MLTHLFPLLLLPYLPLLVDSVSFKIDQIEPNENRLLYQGDAVPNNGAVQFSDPAYSCLVGQAIYKDAIPIWDSETGKLTDFTTHFSFTIDTQNALHYGNGVAFFLAPAGFQIPPNSAGGYLGLFNKTYIDSSINQIVHVEFDSYSNEWDPKFEHVGININSVSSSNFTKWNVSLHSLDTVDVFISYDSTTKYLSVSWNYEKTATSLENTTLSYQIDLMKILPQWATVGFSAATGAYLERHLLFSWEFNSSLEMKQPASTEKNGKKVDVIVGVTVSIGVSILMAIVAFVVLWRLKQKKRKSEEENAEEVNLTSINDDLERGAGPRRFSHKLLAMATNNFSNERKLGQGGFGAVYRGYIPDIDLTVAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDSHLFGKRAPLGWAVRYKIALGLASALLYLHEEGEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRMSRTSMEIESHKGLVEWVWDLYGSGQLIDGMDEKLKSDCDKKQVECLMLVGLWSAYPDPNLRPSIKQAIQIDSVHIGICFVSLSTSNAVHNEHNKNTLIIYCHIAVS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4303464 4312165 + Lsi10G002680.1 Lsi10g00268 671825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00268 642 SMART serkin_6 338 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00268 642 Gene3D Transferase(Phosphotransferase) domain 1 415 611 - -
Lsi10g00268 642 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 11 622 - -
Lsi10g00268 642 PANTHER - 11 622 - -
Lsi10g00268 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Lsi10g00268 642 CDD lectin_legume_LecRK_Arcelin_ConA 21 251 IPR001220 GO:0030246
Lsi10g00268 642 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 253 IPR013320 -
Lsi10g00268 642 CDD STKc_IRAK 344 605 - -
Lsi10g00268 642 ProSitePatterns Protein kinases ATP-binding region signature. 344 368 IPR017441 GO:0005524
Lsi10g00268 642 Pfam Legume lectin domain 21 262 IPR001220 GO:0030246
Lsi10g00268 642 Pfam Protein kinase domain 339 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00268 642 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00268 642 Gene3D Phosphorylase Kinase; domain 1 323 414 - -
Lsi10g00268 642 Gene3D - 18 265 - -
Lsi10g00268 642 SUPERFAMILY Protein kinase-like (PK-like) 322 605 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00268 Lsi-Chr10:4303464 Lsi10g00272 Lsi-Chr10:4344517 0 dispersed
Lsi10g00268 Lsi-Chr10:4303464 Lsi10g00270 Lsi-Chr10:4327645 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83939 PF00069 Pkinase 1.20E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00268 - - bhj:120089089 1136.32