Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00270 ATGCTAAGTCTTCTTCTTCTTCTTCTTCCTTTCCCTGCTGTCTCAGTTTCATTCAAACAACACCAATTCAATTCCATTGATAACAACATACATTATCAGGGAGATGCAGTTATTTCTGGTGGGAAGATTTTGCTTAGTGGCCCTAAATCTTATTCTCATGTTGGTAGAGTTATTTACAAAGATAGCATCCCAATTTGGGATTCTAAAACAGGAAAACTCACTGATTTCTCAACCCATTTCACCTTCTCCATTGATACACAAAATCAAACAAAATATGGTAGTGGAATTGCTTTCTTCTTAGCTCCACCTGACTCTCAAATCCCTACAAATTCAGCTGGTGGGTATCTTGGCCTTTACAACAAGACCTACAAGAACACTCCTATCAACCAAATTCTTCATGTTGAATTTGATTCTGGCATCAATGATTGGGATCCTTCTTATGAACATGTGGGTATCAATGTTAACTCTGTTTCTTCTTCTAATAATACTCGTTTTAATGTTAGCTTACACAGTGGAGATTTGGCTGATGTGTGGATTTACTACAATTCAACCACCAAAAACTTGAGTGTCTCTTGGAAATACCAAAACACATCCACTTCATTAGAAAATTCCACCTTGAGTTACCTTATTGATCTAAGAGACATTCTTCCTCAATGGGTGACAGTGGGAATTACAGGAGCAAATGGAGCATATGTGGAAAGACATACTCTGTTTTCTTGGGAATTCAACTCTACCTTGGATATGAAGCAACCAAGTAAAGATAATGGAAACAAAGTTAATGTGATTGTAGGTGTGACGGTTTCAGTTGGAGTTTTAATCATGGTATTATTTATTGTACTTTGGAGGTTGAAGCAAAAGAAAAGGAAATTAGGAGAGGCAGAAAATCTTGAGGAAGTAAATTTGACATCCATTAACGATGATTTGGAAAGAGGGGTTGGACCGAGAAGGTTTTCTCACAAGCTTCTTGCAATGGCAACCAACAACTTCTCGAATGAAAGAAAGTTAGGGGAAGGAGGATTTGGTGCTGTGTATAGAGGTTACATACCAACCATAGATTTGACAGTAGCTGTGAAGAAAATCTCAAGGGGTTCGAAACAGGGGAGAAAAGAGTATATAACTGAAGTGAAGATCATTAGTAGGCTCCGTCATCGAAACTTGGTACAACTCATTGGTTGGTGTCATGATAAAGGTGAGTTCTTGTTGGTTTATGAATTCATGTCTAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAACCCCTCTTGGTTGGGCTGTGAGATATAAGATTGCTTTAGGTTTAGCCTCTGCTTTGCTCTATCTTCATGAAGAATGGGAACAGTGTGTGGTTCATAGAGATATTAAATCTAGTAATGTCATGTTAGATTCAAACTTTAACGTCAAACTTGGAGATTTTGGTCTAGCTCGATTAATGGACCATGAATTGGGTGCTCAAACAACTAGGTTGGCTGGAACATTGGGGTACTTAGCACCAGAATACATAAGTACAAATAGAGCTAGTAAAGAATCTGATGTGTTTAGCTTTGGGGTGGTTGCTTTAGAGATTGCAACAGGAAAAATGTCAAGAACCTCTTTGGAAAAAGAATCCCATAAGGGTTTGGTGGAGTGGGCTTGGGATCTTTATGGAAGTGGACAATTGCATGTTGGAATAGACGATAAATTGCATTTTGATTATGACAAGAAACAAGTTGAGAGTTTGATGCTTGTTGGACTATGGAGTGCTTATCCAGACCCTAATCTTAGACCTTCCATAAAACAAGTTATTCAAGTTCTAAATTTTGAGATAACGATACCAAATCTTCCAAATAAAATGCCTGTTCCTATATATCCTGCTCCTTCCACATCGACGAGTTCGAATGAACCTTCCTTTACGGTAAGTCTTGGCACAGGTCGTTGA 1917 38.18 MLSLLLLLLPFPAVSVSFKQHQFNSIDNNIHYQGDAVISGGKILLSGPKSYSHVGRVIYKDSIPIWDSKTGKLTDFSTHFTFSIDTQNQTKYGSGIAFFLAPPDSQIPTNSAGGYLGLYNKTYKNTPINQILHVEFDSGINDWDPSYEHVGINVNSVSSSNNTRFNVSLHSGDLADVWIYYNSTTKNLSVSWKYQNTSTSLENSTLSYLIDLRDILPQWVTVGITGANGAYVERHTLFSWEFNSTLDMKQPSKDNGNKVNVIVGVTVSVGVLIMVLFIVLWRLKQKKRKLGEAENLEEVNLTSINDDLERGVGPRRFSHKLLAMATNNFSNERKLGEGGFGAVYRGYIPTIDLTVAVKKISRGSKQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMSNGSLDSHLFGKRTPLGWAVRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTRLAGTLGYLAPEYISTNRASKESDVFSFGVVALEIATGKMSRTSLEKESHKGLVEWAWDLYGSGQLHVGIDDKLHFDYDKKQVESLMLVGLWSAYPDPNLRPSIKQVIQVLNFEITIPNLPNKMPVPIYPAPSTSTSSNEPSFTVSLGTGR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4327645 4329561 + Lsi10G002700.1 Lsi10g00270 671827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00270 638 CDD STKc_IRAK 335 599 - -
Lsi10g00270 638 SUPERFAMILY Concanavalin A-like lectins/glucanases 14 247 IPR013320 -
Lsi10g00270 638 ProSiteProfiles Protein kinase domain profile. 329 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00270 638 ProSitePatterns Protein kinases ATP-binding region signature. 335 359 IPR017441 GO:0005524
Lsi10g00270 638 Pfam Legume lectin domain 16 255 IPR001220 GO:0030246
Lsi10g00270 638 Gene3D Transferase(Phosphotransferase) domain 1 406 619 - -
Lsi10g00270 638 Gene3D - 14 261 - -
Lsi10g00270 638 SUPERFAMILY Protein kinase-like (PK-like) 313 623 IPR011009 -
Lsi10g00270 638 Pfam Protein kinase domain 330 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00270 638 PANTHER PUTATIVE-RELATED 7 633 - -
Lsi10g00270 638 PANTHER - 7 633 - -
Lsi10g00270 638 Gene3D Phosphorylase Kinase; domain 1 314 405 - -
Lsi10g00270 638 SMART serkin_6 329 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00270 638 MobiDBLite consensus disorder prediction 617 638 - -
Lsi10g00270 638 CDD lectin_legume_LecRK_Arcelin_ConA 16 246 IPR001220 GO:0030246
Lsi10g00270 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00270 Lsi-Chr10:4327645 Lsi10g00272 Lsi-Chr10:4344517 0 dispersed
Lsi10g00268 Lsi-Chr10:4303464 Lsi10g00270 Lsi-Chr10:4327645 0 proximal
Lsi10g00270 Lsi-Chr10:4327645 Lsi10g00271 Lsi-Chr10:4339587 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83940 PF00069 Pkinase 5.50E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00270 - - csv:101203586 1127.85