Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00271 ATGAAAAGATCAAGAAAGAAAGGTGAGCCTGATAAATTTTCAAAGCCCTATCCCGATTTCAAATCAAAAGCGCGGACTAACCTGTTTGGAAACTTGAAGATGTCTGAAAAGAGCGGAGATAGGAAGAAAATGCTTCTTACAAAGGACGTAGAGGATTTCAAAAGCTTCCCTATCCCAAGGCAACCCAACGTCGAGTTGGGCCATGGTATCGGGTCAAGGAAAAGGTACCGTCGGGTTGAGATGTTCACCACTGTCGCAATGACACGGGGAATGTCATCTGAGCTTTGGATTCATTCTATTCATCGTGTTATTATATTAGCATCGAGTTCGGCTTCCTTTCGTAACCAATTGCCCCCCTCATTTGGTGACATTTCCACCAAATTCTCCCTTTCTTCAATCGCATTTAATTTCCCCATCGTAACTGCACCTTCCTTTCTCCGCCACCATCTCCGGCGACCCTTCCCCGGTTTCCGCCACCTCCTTCCTCCAGCTAATTTGGAGATTTCAGTGTTTAAACTGAAGTGCCCGAATGAAAACCGTTTACTTTTCCAAGGAGATGCAATTTCTTCTTATGGAGCAATTATCTTTAGTGATCCTAAGTATACCTGTAGTGTTGGTTTGGCTGTTTACAAAGATGCTGTACCAATTTGGGACTCTGAAACAGGAAAAATCACCGATTTCACAACCCATTTCACCTTCACCATTGATACTCAACAATCTTATCTTTTTGGGAGTGGGATTGCTTTTTTCTTAGCTCCACCTGGATTTCATATCCCTCCAAATTCACCTGGTGGGTATCTTGGCCTTTTCAATAAAACCTATATTCATTCACCCATAAACCAAATTGTTCATGTTGAGTTTGATTCTTACTCTAATGAATGGGATCCTAATTTTGAACATGTGGGTATCAATATTAACTCCCTTACTTCCTCTAATTTCACAAGATGGAATGTTAGCTTTCATAGTGGGGATATTATTCATGTGTGGATCTCCTACAATTCAACCACAAAAAATTTGAGTGTCTCCTGGAAATACAAGTATACGTCGAATTCTTCAGAACAAACAACCCTGAATTACCATATTGATCTAATGAAGGTTCTTCCTCAATGGGCAACCGTAGGATTTTCAGCTGCTAATGGTGTATTTAGAGAGCAACATAGCCTATTTTCCTGGGAATTCCACTCCAGCTTGGATATATTATCAAAGCAGCCAACAACTGAAAATAATAACAATAATGGGAGCAAAGTTAATATAGTTGTGGTTGTAATTATTCCACTTGGCGTTTTGATGATTATCATGGCAACAATTTCAATTGCTGTAGTATTTAAGAGATTGAAAGAGCAAAAGAAAGGAAAAACAGAGCAAGAAAATGTTGAGGAAGTAAACTTGAGTACATCGATTAACGACGATTTCAAAAGAGGAGCAGGACCGAGAAGGTTTTCCCACAAGCTTCTTGCCATGGCAACCAATAACTTCTCAAACAAAAGGAAGCTTGGTCAAGGCGGATTCGGTACAGTGTACAGAGGTTACCTTCCAGACATAGATTTGACAATAGCTGTGAAGAAAGTTTCAAGGGGTTCAAAACAAGGAAGAAAGGAATACATAACTGAGGTTAAGATCATTAGTAGGCTCCGCCATCGCAATCTTGTACAACTCATAGGTTGGTGCCATGACAAAGGTGAGTTCTTGTTAGTCTATGAATACATGTCAAATGGTAGCCTTGATTTTCATCTTTTCGGTACCAGAATTCGTCTTGCTTGGGCTGTGAGATACAATATTGCTTTAGGTTTAGCCTCAGCATTGTTGTACCTTCATGAAGAATGGGAGCAATGTGTAGTTCATAGAGACATAAAATCCAGCAATGTCATGTTAGATTCAAGTTTCAATGTCAAGCTTGGGGATTTTGGGCTAGCTCGTTTAATTGATCATGATTTAGGTGCTCAAACAACTGGGTTGGTAGGAACTTTAGGTTACTTAGCGCCTGAATACATAAGTACAGGTAAAGCTAGTAAAGAATCTGATATTTTTAGCTTTGGGGTGGTTGCTTTAGAGATTGCCACTGGGAGAATGTCAAGAACCGTTATGGAAGAGGAATCTCATAAGGGTTTGGTGGAGTGGGTTTGGGATCTTTATGGAAGTGGACAATTGCTTGTAGCTGTGGATGAGAAATTGCAATCTGATTATGACAAAAAACAGGTAGAATGTTTGATGCTCGTTGGATTGTGGAGTGCTTATCCAGATCCTAATCTTAGACCTTCAATAAAACAAGCAATTCAAGTTCTTAACTTTGAGACAAGGATGCCAAATCTTCCCAATAAAATGCCTATACCTTCCTATCGTGCTCCTTTCATATCGATGACATCTAAAGAACCTTCCATGACGGTAAGCCTTGACATAGGTCGTTGA 2406 40.02 MKRSRKKGEPDKFSKPYPDFKSKARTNLFGNLKMSEKSGDRKKMLLTKDVEDFKSFPIPRQPNVELGHGIGSRKRYRRVEMFTTVAMTRGMSSELWIHSIHRVIILASSSASFRNQLPPSFGDISTKFSLSSIAFNFPIVTAPSFLRHHLRRPFPGFRHLLPPANLEISVFKLKCPNENRLLFQGDAISSYGAIIFSDPKYTCSVGLAVYKDAVPIWDSETGKITDFTTHFTFTIDTQQSYLFGSGIAFFLAPPGFHIPPNSPGGYLGLFNKTYIHSPINQIVHVEFDSYSNEWDPNFEHVGININSLTSSNFTRWNVSFHSGDIIHVWISYNSTTKNLSVSWKYKYTSNSSEQTTLNYHIDLMKVLPQWATVGFSAANGVFREQHSLFSWEFHSSLDILSKQPTTENNNNNGSKVNIVVVVIIPLGVLMIIMATISIAVVFKRLKEQKKGKTEQENVEEVNLSTSINDDFKRGAGPRRFSHKLLAMATNNFSNKRKLGQGGFGTVYRGYLPDIDLTIAVKKVSRGSKQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEYMSNGSLDFHLFGTRIRLAWAVRYNIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSSFNVKLGDFGLARLIDHDLGAQTTGLVGTLGYLAPEYISTGKASKESDIFSFGVVALEIATGRMSRTVMEEESHKGLVEWVWDLYGSGQLLVAVDEKLQSDYDKKQVECLMLVGLWSAYPDPNLRPSIKQAIQVLNFETRMPNLPNKMPIPSYRAPFISMTSKEPSMTVSLDIGR 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4339587 4344208 - Lsi10G002710.1 Lsi10g00271 671828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00271 801 Gene3D - 168 420 - -
Lsi10g00271 801 ProSiteProfiles Protein kinase domain profile. 492 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00271 801 MobiDBLite consensus disorder prediction 1 22 - -
Lsi10g00271 801 Pfam Protein kinase domain 493 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00271 801 SUPERFAMILY Protein kinase-like (PK-like) 476 783 IPR011009 -
Lsi10g00271 801 Pfam Legume lectin domain 178 406 IPR001220 GO:0030246
Lsi10g00271 801 CDD lectin_legume_LecRK_Arcelin_ConA 176 397 IPR001220 GO:0030246
Lsi10g00271 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Lsi10g00271 801 SUPERFAMILY Concanavalin A-like lectins/glucanases 176 398 IPR013320 -
Lsi10g00271 801 PANTHER PUTATIVE-RELATED 175 801 - -
Lsi10g00271 801 PANTHER - 175 801 - -
Lsi10g00271 801 CDD STKc_IRAK 498 762 - -
Lsi10g00271 801 Gene3D Phosphorylase Kinase; domain 1 477 568 - -
Lsi10g00271 801 ProSitePatterns Protein kinases ATP-binding region signature. 498 522 IPR017441 GO:0005524
Lsi10g00271 801 SMART serkin_6 492 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00271 801 Gene3D Transferase(Phosphotransferase) domain 1 569 783 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00270 Lsi-Chr10:4327645 Lsi10g00271 Lsi-Chr10:4339587 0 tandem
Lsi10g00271 Lsi-Chr10:4339587 Lsi10g00272 Lsi-Chr10:4344517 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83941 PF00069 Pkinase 1.00E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00271 - - bhj:120088847 972.23