Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00272 ATGGCTACTTCCTCCTATGTCTTTCCAATGGCAAATCATCTCCTTTTCCTTCTCCTTCTTCTTTCCTTCCTTCCTCCCTCCATTGACTCAATTTCTTTCAAAATAGATCGGTTCAAGACCAATGAAAGTGATACACTTTACCAAGGAGATGCCATTCCTTCAGTTGGAGCAGTTGAATTCAACAATGTTAATTATCTTTGTAGAGTTGGTTGGGTTATTTACAAAGACATTGTGCCAATTTGGGACTCTAAAACAGGAAAAGCCACTGATTTCACAACCCATTTCACCTTCTTAATAGATACCCAAAATGTTCAAAACTATGGCCATGGAATAGCTTTCTTTCTAGCTCCTATTGGTTTCCAAATCCCTCCAAACTCAGCTGGTGGCTTTCTTGGCCTTTTCAACACCACAAATAGTGATTCAACCATCAACCAAATTGTTCATGTTGAATTTGATTCTTTCTCAAATCAAGAATGGGATCCCCCATTTGAACATGTGGGCATAAATGTTAACTCCATTGCTTCTTCTAATTACACTCATTGGAATGCTAGTTTACATAGTGGGGATATTGCTGATGTGTGGATCTCCTATAATTCAACTGCAAAAAACTTAAGTGTTTGGTGGAAATACCAAAGTGGGTCAAATTCTTTTGAGAATACAACTCTAAGTTACCAAATTGATCTCATGAAAGTTCTTCCTCAATGGGCTACAATAGGATTTTCAGCTGCAACTGGTATGTATGTAGAGAGACATACATTATTTTCATGGGAATTCAACTCCACTTTGGATATAATTCAAATAAGTGAAGATAATGGCAACAAAGTTAATGTAATTGTGGGTGTGACTGTTTCAATAGGAGTTTCAATTCTCATAGCAATTATAGTCTTTGTAGTACTTTGGAGATTGAAACAAAAGAAAAGAAAATCAGAAGAAGAAAAGGCAGAGGAGGTAAACTTGACATCCATTGATGATGATTTGGAAAGAGGAGTTGGACCAAGAAGGTTTTCTAGCAAGCTTCTTGCCATGGCTACCAACAACTTCTCAAATGAAAGAAAGCTAGGGGAAGGAGGATTTGGTGCAGTGTATAGAGGTTACATACAAGATTTAGATTTGACAATAGCTGTGAAGAAAATCTCAAGGGGTTCAAGACAGGGGAGAAAAGAGTATTTAACTGAAGTGAAGATCATTAGTAGGCTCCGTCATCGAAACTTGGTGCAACTCATTGGTTGGTGTCATGATAAAGGTGAGTTCTTGTTGGTTTATGAATTCATGCCTAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAACCCCTCTTGGTTGGGCTGTGAGATATAAGATTGCTTTAGGTTTAGCCTCTGCTTTGTTATATCTTCATGAAGAATGGGAACAATGTGTGGTTCATAGAGATATTAAATCTAGTAATGTCATGTTAGATTCAAACTTCAATGTCAAGCTTGGGGATTTTGGGTTAGCTAGATTGATGGACCATGAGTTGGGAGCTCAAACAACTGGATTGGTTGGAACTTTGGGTTACTTAGCTCCTGAATACATAAGCACAGGCAGAGCTAGTAAAGAATCTGATGTGTTTAGTTTTGGGGTTGTTGCTTTGGAGATTTCCACTGGAAGAATGTCAAGAAACTCCATGGAAATGGAATCTCATAAGGGTTTAGTAGAGTGGGTTTGGGATCTTTATGGAAGTGGAAAGCTTTTTATGGGAGTTGATAAGAAATTGCTGCAATCTGATTATGACCAAAAACAAATAGAATGTTTGATGCTTGTTGGACTTTGGAGTGCTTATCCAGATCCTAATCTAAGACCTTCAATTAGACAAGTGATTCAAGTTCTTAATTTTGAAACAACAATGCCAAATCTTCCAAGTAAAATGCCTGTAGCTATATATCATGCTCCTTCCACATCAATGAGCTCAAATGAACCAACGATTACTGCAAGTCTTGATATGGGTCGTTGA 1974 37.69 MATSSYVFPMANHLLFLLLLLSFLPPSIDSISFKIDRFKTNESDTLYQGDAIPSVGAVEFNNVNYLCRVGWVIYKDIVPIWDSKTGKATDFTTHFTFLIDTQNVQNYGHGIAFFLAPIGFQIPPNSAGGFLGLFNTTNSDSTINQIVHVEFDSFSNQEWDPPFEHVGINVNSIASSNYTHWNASLHSGDIADVWISYNSTAKNLSVWWKYQSGSNSFENTTLSYQIDLMKVLPQWATIGFSAATGMYVERHTLFSWEFNSTLDIIQISEDNGNKVNVIVGVTVSIGVSILIAIIVFVVLWRLKQKKRKSEEEKAEEVNLTSIDDDLERGVGPRRFSSKLLAMATNNFSNERKLGEGGFGAVYRGYIQDLDLTIAVKKISRGSRQGRKEYLTEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDSHLFGKRTPLGWAVRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEISTGRMSRNSMEMESHKGLVEWVWDLYGSGKLFMGVDKKLLQSDYDQKQIECLMLVGLWSAYPDPNLRPSIRQVIQVLNFETTMPNLPSKMPVAIYHAPSTSMSSNEPTITASLDMGR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4344517 4346490 - Lsi10G002720.1 Lsi10g00272 671829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00272 657 Gene3D Transferase(Phosphotransferase) domain 1 424 639 - -
Lsi10g00272 657 CDD STKc_IRAK 353 618 - -
Lsi10g00272 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 265 IPR013320 -
Lsi10g00272 657 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
Lsi10g00272 657 ProSitePatterns Protein kinases ATP-binding region signature. 353 377 IPR017441 GO:0005524
Lsi10g00272 657 Pfam Protein kinase domain 348 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00272 657 SMART serkin_6 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00272 657 SUPERFAMILY Protein kinase-like (PK-like) 328 620 IPR011009 -
Lsi10g00272 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Lsi10g00272 657 Gene3D - 28 286 - -
Lsi10g00272 657 Pfam Legume lectin domain 31 267 IPR001220 GO:0030246
Lsi10g00272 657 PANTHER PUTATIVE-RELATED 23 657 - -
Lsi10g00272 657 ProSiteProfiles Protein kinase domain profile. 347 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00272 657 CDD lectin_legume_LecRK_Arcelin_ConA 31 262 IPR001220 GO:0030246
Lsi10g00272 657 PANTHER - 23 657 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00684 Lsi-Chr3:8688781 Lsi10g00272 Lsi-Chr10:4344517 0 dispersed
Lsi05g00796 Lsi-Chr5:11636923 Lsi10g00272 Lsi-Chr10:4344517 0 dispersed
Lsi05g00799 Lsi-Chr5:11694208 Lsi10g00272 Lsi-Chr10:4344517 0 dispersed
Lsi10g00268 Lsi-Chr10:4303464 Lsi10g00272 Lsi-Chr10:4344517 0 dispersed
Lsi10g00270 Lsi-Chr10:4327645 Lsi10g00272 Lsi-Chr10:4344517 0 dispersed
Lsi10g00271 Lsi-Chr10:4339587 Lsi10g00272 Lsi-Chr10:4344517 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83942 PF00069 Pkinase 6.40E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00272 - - csv:101203101 1176.77