Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00278 ATGGCTCCCGCCGCTAAGACCGTCTGCGTAATGGACGCTTCCAGCGGCGTTGGCTCAGCGCTTGTGGCAGCGCTGTTGCAGAGAGGCTACACCGTCCACGCTTCCGTCCAGAATCACGATGATTTGCAGTGTGTGAAGGGAAATGCGAACAAATTGAAGGTTTTCCGTTCGGATCTGTTGGATTATCACAGCATTATGATCGCTCTTAAAGGATGCTCCGCTTTGTTCTATTCATTTCAACCTCTTCCTGATCATTCCACCTACGATGAATTAATGGTGGAAGTTGAAGTAAGAGCAGCTCATAATGTTCTGGAAGCATGTGCCCAAACGGACACTATCGAGAAAGTTATTTTCACTTCCTCCGTTACTGCGGTAATTTGGCGTGACGGCCTCAAAACGATGTCGTCCGATGTCGACGAACGCCACTGGAGTGACGTCAATCTCTGCAAGAAGTTCAAACTGTGGCACGCTCTATCAAAAACCCTAGCAGAGAAAACAGCGTGGGCCCTAGCGATGGATCGTGGGGTGAATATGGTGTCCATAAATGGAGGGCTGGTGATGGGCCACGATCTGACGATCAATAACCCATATTTGAAAGGAGCGGCTGAGATGTATGAAGATGGGCTGTTGGTGACCGTCGATCTTAAGTTCATGGTTGATGCTCATATATGCGTGTTTGAAGATATCTCATCCTACGGTCGATATTTGTGCTTCAATAATATCATTAATTGCCATAAGGAAGCTCTTAGATTAGCCCACATGCTATTGCCGCCCTCTTCTGAAGCTTTCTCACCTTCCAGTTTGGAAAAATCTGTTGTATATCAACAAGGGATAAGCAACAAGAAACTTAACAAATTGATGGTGGATTTTGAAAGTGGAGATTCATGTTGA 891 46.13 MAPAAKTVCVMDASSGVGSALVAALLQRGYTVHASVQNHDDLQCVKGNANKLKVFRSDLLDYHSIMIALKGCSALFYSFQPLPDHSTYDELMVEVEVRAAHNVLEACAQTDTIEKVIFTSSVTAVIWRDGLKTMSSDVDERHWSDVNLCKKFKLWHALSKTLAEKTAWALAMDRGVNMVSINGGLVMGHDLTINNPYLKGAAEMYEDGLLVTVDLKFMVDAHICVFEDISSYGRYLCFNNIINCHKEALRLAHMLLPPSSEAFSPSSLEKSVVYQQGISNKKLNKLMVDFESGDSC 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4455691 4460744 - Lsi10G002780.1 Lsi10g00278 671835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00278 296 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 293 - -
Lsi10g00278 296 Pfam NAD(P)H-binding 13 124 IPR016040 -
Lsi10g00278 296 PANTHER - 4 293 - -
Lsi10g00278 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 250 IPR036291 -
Lsi10g00278 296 Gene3D - 2 296 - -
Lsi10g00278 296 CDD FR_SDR_e 8 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00278 - - - csv:101217768 560.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00885 Lsi-Chr3:15675344 Lsi10g00278 Lsi-Chr10:4455691 4.74E-113 dispersed
Lsi04g01575 Lsi-Chr4:23330314 Lsi10g00278 Lsi-Chr10:4455691 1.62E-19 dispersed
Lsi06g01091 Lsi-Chr6:21199943 Lsi10g00278 Lsi-Chr10:4455691 1.19E-86 dispersed
Lsi10g00278 Lsi-Chr10:4455691 Lsi03g01266 Lsi-Chr3:23357447 1.71E-17 dispersed
Lsi10g00278 Lsi-Chr10:4455691 Lsi02g01571 Lsi-Chr2:21570174 3.81E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g749 . . . . . . . . . . . . . . . . . Bhi05g01005 . . . Hepe02g0667 . . . . . . . . . . . . . Lsi10g00278 . . . . . . . . . . . . . . . . . . . . Bhi10g01657 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002312 4 3 3 3 3 2 2 2 2 1 2 2 2 1 1 1 2 3 2 2 1 2 1 2 2 2 2 1 3 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00278 Lsi_Chr10 FPKM 38.057678 41.849361 15.376281 15.520346 21.949442 20.601875 23.81209 1.738885 2.172899 1.799009