Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00292 ATGGCTTCTTCACCAAACAAAAATGACGATGTAGCCTACGACTTCTTTCCCTTCGTCAGAATCTACAAAGACGGTCGCGTCCAAAGACTCCAAATCACCTCTTACATTGTTTCTGCTGACGCCGATGACCCCAAATCTGCTTTTCTATCAAAAGATGTGACGATCTCGGCGGATCCCGCCGTGTCGGCGCGTATATTCATCCCCTCTTTCGCTGATCCAAATCAGAAGCTGCCCATCCTCTTGTACGTCCACGGCGGAGGGTTCTGCATCGAATCGGCTTTCAATTTGCAGTACCACAGCTACGTGGGTTCTCTTGCTGTCAAGGCTAATGTCGTCGCTGTCTCTGTTGAGTACCGCCTCGCGCCGGAGCATCTGTTCCCCGCCTGTTACGAGGACTGTTGGGATGCTTTACGGTGGGTTGCGACACATGTGAACAGGGATGGTCCAGAGCCGTGGCTAAACAACCATGCAGATTTCAATCGAGTCTGTTTGGCCGGCGACAGTGCCGGTGCCAACATCTGCAATCATTTGGCTGTGCGAGCAGGTTCATCAGCAGAGCAACTGGGCGGAATAAAGGTGGTGGCAATGGCTTTGATTCACCCGTTCTTCGGTGACGGGGGAGATGATAGGCTATGGAAGTATCTGTGTTCGGATCAGACGAGGTCGGCGAGGCCAAGGACAGAGGATTTGGCAAAGTTGCCATGTGGAAGAGTGAAGGTTTTTTTGGCAGAAGAAGATTTTTTGAAAGTTGGAGGGAGGAATTACGGTGAGGATTTGAAGAGGAGCAGGTGGAATGGGGCGGTGGAGACGGTGGAGCACGATGGAGAAGATCATGTGTTTCATTTGAAGAAGCCAGAGTGTGAAAAGGCACTTGATTTGTTGGAAAAATTAGCCTCTTTCATCAACTTAGATTAG 915 50.38 MASSPNKNDDVAYDFFPFVRIYKDGRVQRLQITSYIVSADADDPKSAFLSKDVTISADPAVSARIFIPSFADPNQKLPILLYVHGGGFCIESAFNLQYHSYVGSLAVKANVVAVSVEYRLAPEHLFPACYEDCWDALRWVATHVNRDGPEPWLNNHADFNRVCLAGDSAGANICNHLAVRAGSSAEQLGGIKVVAMALIHPFFGDGGDDRLWKYLCSDQTRSARPRTEDLAKLPCGRVKVFLAEEDFLKVGGRNYGEDLKRSRWNGAVETVEHDGEDHVFHLKKPECEKALDLLEKLASFINLD 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4755578 4760305 - Lsi10G002920.1 Lsi10g00292 671849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00292 304 Pfam alpha/beta hydrolase fold 80 202 IPR013094 GO:0016787
Lsi10g00292 304 Gene3D alpha/beta hydrolase 17 303 IPR029058 -
Lsi10g00292 304 SUPERFAMILY alpha/beta-Hydrolases 17 302 IPR029058 -
Lsi10g00292 304 PANTHER ARYLACETAMIDE DEACETYLASE 8 302 - -
Lsi10g00292 304 PANTHER CARBOXYLESTERASE 12-RELATED 8 302 - -
Lsi10g00292 304 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 162 174 IPR033140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00292 - - - csv:101215847 509.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00292 Lsi-Chr10:4755578 Lsi10g00295 Lsi-Chr10:4791596 8.61E-84 dispersed
Lsi10g00291 Lsi-Chr10:4723396 Lsi10g00292 Lsi-Chr10:4755578 3.37E-88 tandem
Lsi10g00292 Lsi-Chr10:4755578 Lsi10g00293 Lsi-Chr10:4761308 2.68E-73 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g439 . . . . Bpe07g00393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00292 . . . . . . . . . . . Sed01g0355 . Cmo20g00902 . . . . . . Bhi10g02090 Tan05g1437 Cmetu11g1551 . Hepe08g1091 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00292 Lsi_Chr10 FPKM 7.138789 8.525328 10.262473 10.594066 9.780045 9.939546 10.415489 15.068242 13.108409 13.818485