Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00302 ATGGATTCTGACGCCGCCGGTGGAGATGGGGTCGTCTTCGAATTCCTCCCCGTCTTCCGCGTCTTCAAAAGCGGTCGCGTCCAGAGGCTCTTCCCCTGCGATCGCCTTCCGCCGTCCACCGATCAACTTACTGGCGTCCAATCCAAAGACATCTTCATCGATCCACTAACCCAACTCTCCGTCCGGATCTACCTCCCACATCTTTCACACTCCACCAAGAAGCTCCCACTTCTAATTTACATCCACGGCGGCGCCTTCTCCATCGGCTCCGTCGCGTCGCCGATCTATCACCACCATCTTATCTCCCTCGCCGCCGAGTCCAACGCCGTCGCCCTCTCGGTAGAGTACCGTCTTGCGCCGGAGAATCCTCTCCCAGCGGCGTACGACGACGCATGGGCGGCGGTGGAATGGGCGGCATCGCATTCCAATCGCGACGGAGTGGAGATTTGGCTGAACCAACACGCGGATTTCGACCGCGTATTTGTCGTCGGGGATAGTGCTGGGGCCAACATTGCCTACAATGTGGTGGGCCGGGCTAGTGAGAGTAGTAATGGGCCGAAGGGAATGAAGATAATTGGGTTGGGCCTGGTTCATCCATTTTTCATGATTGACAAGCCCGATAAGTTGATGGAATATATTTTCCCCACGTCAGCGGGTTTGGAGGATCCGAGGCTTAACCCGTGGGCCAACCCGGGACTCGGGAAGCTACGGTGTGAGCGAGTGTTGATAATGGCGGCAGAACTTGATGGCCTAAAGGATAGAGCGCGTGGGTTTCACGCAGCCTTAAGGGAGAGTGGATTTGAAGGGTCTGTGGAGATAGTTGAGACTGAAGGAGAGGACCACGCTTTTCATTTGTTTAACCCCGAGACAGATAAGGCTGTTGCGCTGGTCAAAAAGGTTGCTTCCTTTATCCAATCAAAGTAA 924 55.19 MDSDAAGGDGVVFEFLPVFRVFKSGRVQRLFPCDRLPPSTDQLTGVQSKDIFIDPLTQLSVRIYLPHLSHSTKKLPLLIYIHGGAFSIGSVASPIYHHHLISLAAESNAVALSVEYRLAPENPLPAAYDDAWAAVEWAASHSNRDGVEIWLNQHADFDRVFVVGDSAGANIAYNVVGRASESSNGPKGMKIIGLGLVHPFFMIDKPDKLMEYIFPTSAGLEDPRLNPWANPGLGKLRCERVLIMAAELDGLKDRARGFHAALRESGFEGSVEIVETEGEDHAFHLFNPETDKAVALVKKVASFIQSK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4830252 4831175 - Lsi10G003020.1 Lsi10g00302 671859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00302 307 Gene3D alpha/beta hydrolase 23 307 IPR029058 -
Lsi10g00302 307 SUPERFAMILY alpha/beta-Hydrolases 11 305 IPR029058 -
Lsi10g00302 307 PANTHER ARYLACETAMIDE DEACETYLASE 8 304 - -
Lsi10g00302 307 Pfam alpha/beta hydrolase fold 78 284 IPR013094 GO:0016787
Lsi10g00302 307 PANTHER CARBOXYLESTERASE 13-RELATED 8 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00302 - - - cmax:111499978 502.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00290 Lsi-Chr10:4691065 Lsi10g00302 Lsi-Chr10:4830252 1.82E-82 dispersed
Lsi10g00295 Lsi-Chr10:4791596 Lsi10g00302 Lsi-Chr10:4830252 1.24E-170 dispersed
Lsi10g00298 Lsi-Chr10:4798764 Lsi10g00302 Lsi-Chr10:4830252 6.54E-100 dispersed
Lsi10g00299 Lsi-Chr10:4803714 Lsi10g00302 Lsi-Chr10:4830252 5.84E-13 dispersed
Lsi10g00300 Lsi-Chr10:4821952 Lsi10g00302 Lsi-Chr10:4830252 6.77E-32 dispersed
Lsi10g00302 Lsi-Chr10:4830252 Lsi04g02135 Lsi-Chr4:28485431 4.04E-48 dispersed
Lsi10g00302 Lsi-Chr10:4830252 Lsi10g00303 Lsi-Chr10:4844272 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g443 . Blo15g00733 . Bda08g00848 . . . . . . Cma02g00444 Cma20g00893 Car02g00301 Car20g00770 . . . . . . . . . . . . . . . . . . . . . Lsi10g00302 . Chy11g00444 . . . . . . . . . . Cmo02g00453 Cmo20g00900 . . . . . . Bhi10g02087 . . . Hepe08g1071 . . Cla09g01703 Cam09g1798 Cec09g1861 Cco09g1952 . . Cre01g0708 . Csa02g01192 . Cme11g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00302 Lsi_Chr10 FPKM 71.421272 84.005661 77.76754 79.449242 90.296593 85.932846 90.318863 110.236824 107.591499 114.375603