Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00311 ATGCCTCCCAACACTCCCATTATCCTCTCTTTTCTCTTCCTAATTCTTCCCTTTTTCTTCCTTTCATCTTTTTCTGATCCTAATTATAATTATGACAATCAAAAGAATGTTTATGCTGAGCTTAGACCCGACTTTTACGACGAGTCGTGTCCCCGTTTGCCAATGATAATTCGGTATCATGTTTGGGCTGCTGTCCAAAATGACTCTAGAATTGCTGCATCGTTGTTGCGGTTGAATTTCCACGACTGCATTGTAGACGGATGTGATGCATCGGTGCTGCTTGACGATACGAAAGATATGAAAGGTGAGAAAAAAGCTCCGGGCAATGTGAATTCGCTTCGAGGATTTGAAGTGATTGATGGTATAAAAGCAGATGTAGAAACATATTGCCCACAGACAGTTTCTTGTGCTGATATTGTGAATCTTGCAGCTAGAGAAGCTGTGTATCTGGTTGGAGGACCATTTTGGCACCTTCCGCTAGGACGTAAGGATGGGTTAACTGCAAGCACAAAATCAGTTCTGGCACAGCTCCCATCTCCCAAAGCCTCTCTAGAGAACAACACCGCCAAGTTCATCTCAAAAGGCCTCGACTTAAAGGATCTCGTCGTACTTTCAGGAGCCCACACCATCGGTTTTGCCCGCTGCGTCACATTCAAAGGCCGTCTCTTCAACTACAAAGGCTCCGGTAACCCAGATCCTGACATTAACTCCGCAATGCTCTCCGATCTGCGGTCCATGTGCCCCAACAGGAACGACGGCACCAACGCCAATTTGGCGCCGCTGGATGTGGCCAGTTACGACAGATTCGACAACGAGTACTATACGAATTTGATTAGCAATGTTGGGCTTTTGGAGTCCGATCAGGGTCTGATGGCAGACCCCCAGACGGCGCGGATGGTCAGAGATTACAGTTTTGATCCGAATTTGTTCTTTGATGACTTTGCGGAGTCGATGTTTAGGATGAGCTTGGTTGGGGTTATGACCGGTCACGAAGGGCAGATTCGAAAGGAGTGTGGAGCTGTTAATAATGATGATGGCTACTGA 1044 46.74 MPPNTPIILSFLFLILPFFFLSSFSDPNYNYDNQKNVYAELRPDFYDESCPRLPMIIRYHVWAAVQNDSRIAASLLRLNFHDCIVDGCDASVLLDDTKDMKGEKKAPGNVNSLRGFEVIDGIKADVETYCPQTVSCADIVNLAAREAVYLVGGPFWHLPLGRKDGLTASTKSVLAQLPSPKASLENNTAKFISKGLDLKDLVVLSGAHTIGFARCVTFKGRLFNYKGSGNPDPDINSAMLSDLRSMCPNRNDGTNANLAPLDVASYDRFDNEYYTNLISNVGLLESDQGLMADPQTARMVRDYSFDPNLFFDDFAESMFRMSLVGVMTGHEGQIRKECGAVNNDDGY 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4965744 4969326 - Lsi10G003110.1 Lsi10g00311 671868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00311 347 PANTHER PEROXIDASE 10 31 341 - -
Lsi10g00311 347 ProSiteProfiles Plant heme peroxidase family profile. 40 342 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 Pfam Peroxidase 59 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PANTHER PEROXIDASE 72-RELATED 31 341 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 ProSitePatterns Peroxidases proximal heme-ligand signature. 200 210 IPR019793 -
Lsi10g00311 347 PRINTS Haem peroxidase superfamily signature 152 164 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Haem peroxidase superfamily signature 134 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Haem peroxidase superfamily signature 200 215 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Haem peroxidase superfamily signature 72 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601
Lsi10g00311 347 Gene3D Peroxidase, domain 2 178 321 - -
Lsi10g00311 347 Gene3D - 44 342 - -
Lsi10g00311 347 PRINTS Plant peroxidase signature 133 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Plant peroxidase signature 114 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Plant peroxidase signature 199 211 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Plant peroxidase signature 316 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Plant peroxidase signature 50 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Plant peroxidase signature 276 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Plant peroxidase signature 74 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Plant peroxidase signature 152 167 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 PRINTS Plant peroxidase signature 260 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00311 347 CDD secretory_peroxidase 40 341 IPR033905 GO:0004601|GO:0042744
Lsi10g00311 347 SUPERFAMILY Heme-dependent peroxidases 41 342 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00311 Lsi-Chr10:4965744 Lsi01g00641 Lsi-Chr1:5166953 4.19E-96 dispersed
Lsi11g01605 Lsi-Chr11:24387031 Lsi10g00311 Lsi-Chr10:4965744 3.88E-70 dispersed
Lsi04g00579 Lsi-Chr4:5295693 Lsi10g00311 Lsi-Chr10:4965744 2.29E-79 transposed
Lsi01g00995 Lsi-Chr1:8224675 Lsi10g00311 Lsi-Chr10:4965744 2.70E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00311 K00430 - csv:101209504 604.749