Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00312 ATGGCGCAACCAAATTCTGAAGAGAAAGTGAGTGAAAGCCCTGAAATGGAAGTCAACAAAGAAGCTATCAATGGCGATGGCGATGATGGAAGTAGTAACAGTAGCATTGCTAATTTGGCCTTCAGATTCAATGCTCAAGCGCCTGAGTTTTTCCCTAGATCGCAAACCCAGATGCCTGTTACTGGTTATTTTCATCCTTATTTCCATTTTCTTGGTGGGGGTCCTGCTACTTCAGATTGGTTCTTTATTGGGGATCAAGAACCAGCCTATTTGATCCCTAATCCCACCATTCCGCTCCCTAATTTCTCTAAGAGTGCCCGTTCTGAGGAAATTCAGCAAAAAATCATCAAACAGGTAGAATATCAGCTCAGTGACATGAGTCTTCTTGCAAATGAGACTCTTGCAAAACACATTGGTAAAGATCCTGATGGTTATGTTCCGATTTCTATTCTTTCGTCGACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTTATAGTTCAAGCACTCCGATCCTCTTCCAGGCTTGTTGTCAGTGCTGATGGGAAGAAAGTTAGGCGTAAGATTCCATTCACAGAGAAGGACAGGGATGAATTGCTGGTAAGATCAGCCATTGCCCGCTCAGTTGTTGTTGAGAATTTGCCCGAAAATCACTCACATCACAACCTGGAGAAAATATTTGGTGTCATCGGAAGGTATGTTAAGACTATCCGAATCTGTCATCCCCCGGAATCGAATCCCTGCTGCTCTAAAGGTGAATTGTTTGTCAGACACTTATCCTCAAAATCTTTTTCTCATTGTTTCTTCATTTGTTTGAAGCTTCATGCACTCGTGGAGTTTGAGACAGGAGAGTTGGCTGAAAGAGCGGTCGAGCAGTTAAACGATGAGAGAAACTGGAGGAAAGGACTCCGAGTAAGGTCACTGGTGAGACGTTCGGTAAGTCCGAAGTCTGTTCTGAAGACTCGAAAATCAGAATTTGATAGCATTTTGGATGATGATGATTCACCATCTCCTGTATCCGTTGAAGACTCGTCTCTGCCGAATATCAATGACCTGATTGTCGATTGCAATTCTGAAGAGAACTCTACATCATCTAAGAAGAGCTGGGGTCGAGGACGTGGGAAGGGGCGTGGACGACTTCATAACCATCTCGATCGTAGCTATAGCTTGCCAGTTACGTCATCGCTGCAGACGAGTGGGCAGGTTTTGTGTGAAGCATCTTCTAAACTCACTTCAAAGAGTCCAAGAATGCCTGATGGGACTAAAGGTTTCACCATGGGAAGAGGCAAGCCATTAAGTTCTAAACCATTATTCAATAGGCTTGTTGACTGA 1335 43.75 MAQPNSEEKVSESPEMEVNKEAINGDGDDGSSNSSIANLAFRFNAQAPEFFPRSQTQMPVTGYFHPYFHFLGGGPATSDWFFIGDQEPAYLIPNPTIPLPNFSKSARSEEIQQKIIKQVEYQLSDMSLLANETLAKHIGKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVVSADGKKVRRKIPFTEKDRDELLVRSAIARSVVVENLPENHSHHNLEKIFGVIGRYVKTIRICHPPESNPCCSKGELFVRHLSSKSFSHCFFICLKLHALVEFETGELAERAVEQLNDERNWRKGLRVRSLVRRSVSPKSVLKTRKSEFDSILDDDDSPSPVSVEDSSLPNINDLIVDCNSEENSTSSKKSWGRGRGKGRGRLHNHLDRSYSLPVTSSLQTSGQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLSSKPLFNRLVD 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4994984 4998580 - Lsi10G003120.1 Lsi10g00312 671869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00312 444 PANTHER LA-RELATED PROTEIN 6C 7 435 - -
Lsi10g00312 444 MobiDBLite consensus disorder prediction 1 35 - -
Lsi10g00312 444 MobiDBLite consensus disorder prediction 359 381 - -
Lsi10g00312 444 PANTHER LUPUS LA PROTEIN-RELATED 7 435 IPR045180 -
Lsi10g00312 444 Pfam La domain 115 172 IPR006630 -
Lsi10g00312 444 ProSiteProfiles La-type HTH domain profile. 105 196 IPR006630 -
Lsi10g00312 444 MobiDBLite consensus disorder prediction 407 444 - -
Lsi10g00312 444 SUPERFAMILY Winged helix DNA-binding domain 107 192 IPR036390 -
Lsi10g00312 444 Gene3D - 107 196 IPR036388 -
Lsi10g00312 444 Gene3D - 203 315 IPR012677 -
Lsi10g00312 444 SMART la 109 189 IPR006630 -
Lsi10g00312 444 SUPERFAMILY RNA-binding domain, RBD 208 310 IPR035979 GO:0003676
Lsi10g00312 444 MobiDBLite consensus disorder prediction 10 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00312 K15191 LARP7; La-related protein 7 - csv:101217948 660.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00156 Lsi-Chr1:1571076 Lsi10g00312 Lsi-Chr10:4994984 6.42E-35 dispersed
Lsi03g00890 Lsi-Chr3:15850501 Lsi10g00312 Lsi-Chr10:4994984 9.85E-35 dispersed
Lsi08g01099 Lsi-Chr8:19596832 Lsi10g00312 Lsi-Chr10:4994984 7.34E-09 dispersed
Lsi10g00312 Lsi-Chr10:4994984 Lsi10g00936 Lsi-Chr10:13791623 1.42E-07 dispersed
Lsi10g00312 Lsi-Chr10:4994984 Lsi04g01766 Lsi-Chr4:24898911 1.15E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00312 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0