Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00316 ATGACGTCTTCAACCTTCAGTTCTGTTTCCTGTTTACTCAAGGATGAATCAAAGATTTTGAAGGTTAAAAAGCGAAATGAAGGGAAGGTGTTTGTTAAATGTTCAGTGAGCACTAAAGCTCAAAAGCCACAGCCGGAAGTTCGCATTGGTGTTCTTGGAGCTAGTGGTTACACTGGTTCGGAGATTGTTAGGCTTCTAGCAAATCATCCACACTTTGGCATTACTCTCATGACTGCTGATAGGAAAGCTGGTCAACCGTTTTCATCAGTATTTCCTCATCTATTCACACAAGATCTTCCAGATTTGGTAGCCATCAAAGATGCGGATTTTTCAGAGGTGGATGCCATATTTTGCTGTTTGCCACATGGAACAACGCAGGAAGTTATTAAAGCCCTTCCCAAGGACTTAAAGATTGTGGACCTTTCAGCTGACTTCCGGTTGCAAGATCCACTCGAATACGAGGAGTGGTATGGCCAGGCACATAGAGCAGTGGATTTGCAGAAAGAAGCTGTGTATGGTTTGACAGAAATTTTGAGAGATAAAGTCAAGGGTGCTCGTCTTGTAGCCAATCCTGGTTGTTATCCAACATCTATTCAACTTCCTCTTGTACCACTAATAAAGGCTAATCTAATTCAACTTGGGGGCATCATTATTGATTCCAAGTCTGGCGTTAGTGGAGCTGGACGTGGTGCCAAAGAGGCAAATTTATACACCGAAATAGCTGAAGGCATTTATTCTTATGGAATTACCCGCCATCGTCATGTTCCTGAAATTGAGCAGGGACTGTCGGAAGCCGCAAAGTCAGAAGTAACCGTCAGTTTTACGCCACACCTAATGCCAATGATTCGAGGTATGCAATCAACTATATATGTTGAAATGGCTCCAGGGACGACTACTGAGGATTTGCACCAACACTTAAAAGTCTCCTATAAGGAAGAAGAATTTGTACGCGTGTTGGAGAAAGGAGTCGTCCCTCGTACTCATAATGTCCGAGGGTCTAATTATTGCCACATCAACGTCTTTCCCGACCGAATTCAAGGAAGAGCAATCATTGTTTCTGTTATTGATAATCTTGTGAAGGGGGCTTCAGGTCAAGCTCTACAGAATCTCAATTTGATGATGGGATTCCATGAAACTACAGGGCTCCTTTACCAGCCCCTGTTTCCTTAA 1170 43.16 MTSSTFSSVSCLLKDESKILKVKKRNEGKVFVKCSVSTKAQKPQPEVRIGVLGASGYTGSEIVRLLANHPHFGITLMTADRKAGQPFSSVFPHLFTQDLPDLVAIKDADFSEVDAIFCCLPHGTTQEVIKALPKDLKIVDLSADFRLQDPLEYEEWYGQAHRAVDLQKEAVYGLTEILRDKVKGARLVANPGCYPTSIQLPLVPLIKANLIQLGGIIIDSKSGVSGAGRGAKEANLYTEIAEGIYSYGITRHRHVPEIEQGLSEAAKSEVTVSFTPHLMPMIRGMQSTIYVEMAPGTTTEDLHQHLKVSYKEEEFVRVLEKGVVPRTHNVRGSNYCHINVFPDRIQGRAIIVSVIDNLVKGASGQALQNLNLMMGFHETTGLLYQPLFP 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5082412 5087512 + Lsi10G003160.1 Lsi10g00316 671873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00316 389 SMART Semialdhyde_dh_3 48 185 IPR000534 GO:0016620|GO:0051287
Lsi10g00316 389 TIGRFAM argC: N-acetyl-gamma-glutamyl-phosphate reductase 47 389 IPR000706 GO:0003942|GO:0006526
Lsi10g00316 389 PANTHER N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED 9 389 - -
Lsi10g00316 389 Hamap N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 47 383 IPR000706 GO:0003942|GO:0006526
Lsi10g00316 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 213 IPR036291 -
Lsi10g00316 389 Gene3D Dihydrodipicolinate Reductase; domain 2 191 357 - -
Lsi10g00316 389 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 193 357 - -
Lsi10g00316 389 ProSitePatterns N-acetyl-gamma-glutamyl-phosphate reductase active site. 188 204 IPR023013 GO:0003942
Lsi10g00316 389 Pfam Semialdehyde dehydrogenase, dimerisation domain 202 360 IPR012280 GO:0008652|GO:0016620|GO:0046983
Lsi10g00316 389 Gene3D - 48 375 - -
Lsi10g00316 389 Pfam Semialdehyde dehydrogenase, NAD binding domain 48 184 IPR000534 GO:0016620|GO:0051287
Lsi10g00316 389 PANTHER N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED 9 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00316 K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] - csv:101213242 737.258
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g472 . . . . . . . . . . Cma02g00436 . Car02g00290 . . . . . . . . . . . . . . . . . . . . Cone3ag1119 . Lsi10g00316 . Chy11g00431 . . . . . . . . . . Cmo02g00438 . . . . . . Cpe05g01227 Bhi10g02069 . . . Hepe08g1060 . . Cla09g01722 Cam09g1816 Cec09g1878 Cco09g1970 . . Cre01g0689 . Csa02g01205 . Cme11g00503
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010951 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00316 Lsi_Chr10 FPKM 3.572161 4.235343 43.120415 40.413731 12.005808 12.170364 11.536257 29.161856 29.163794 33.657715