Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00318 ATGAAAAATCCGCCGTCTGTCCGCGGTGGCGACGGCGGTGATGGCAAGCACTTCGTTCTAGTTCACGGAGCCTGCCTTGGCGCCTGGTCCTGGTACAAGCTATCCACGCTGCTCCGATCGGCCGGGCACCGCGTGACGGCGCTGGACATGGCGGGGGCCGGAATAGATCCGAGGGAGGCGGAGAGTCTGAAATCGTTTAGCGAATACGTTCAACCGTTGACGAATTTTATGGCGGAGCTGGCGGCGGAGGAGAAGGTGATTCTGGTAGGGCACAGCCAAGGCGGGCTCTGCATCTCGAAGGCGATGGAGGGGTTTCCGGATAAAATATCTGTGGCTTCAGTTAAGAGCCGTTATACATTTGGTAATGGGCCCAAAAGCCCTCCAACAACTTTGACATTTGGCCCATTGTTCTCGGCCTCAAAACTATTCAACAAGAGCCCCAAAGAGGAAAGGTACGGCGCCGTCAAACGAGTTTTTGTTGTTTCGGATAAGGATAAGGTTATCCAAAAGAGCTTCCAAAAATGGTTGATTCAAAGAAATCCACCAACGGCTGTTGTGGAAGTTAGAGGATCTGATCATATGGTGATGATGTCTAAGCCGTTGGATCTCTTCAACAAACTTTCCCATATTGCTCATCAATATTCTTAA 648 51.08 MKNPPSVRGGDGGDGKHFVLVHGACLGAWSWYKLSTLLRSAGHRVTALDMAGAGIDPREAESLKSFSEYVQPLTNFMAELAAEEKVILVGHSQGGLCISKAMEGFPDKISVASVKSRYTFGNGPKSPPTTLTFGPLFSASKLFNKSPKEERYGAVKRVFVVSDKDKVIQKSFQKWLIQRNPPTAVVEVRGSDHMVMMSKPLDLFNKLSHIAHQYS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5124845 5134269 - Lsi10G003180.1 Lsi10g00318 671875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00318 215 Pfam Alpha/beta hydrolase family 18 133 IPR000073 -
Lsi10g00318 215 PANTHER ESTERASE PIR7A-RELATED 115 150 - -
Lsi10g00318 215 Gene3D alpha/beta hydrolase 112 215 IPR029058 -
Lsi10g00318 215 PANTHER METHYLESTERASE FAMILY MEMBER 115 150 IPR045889 -
Lsi10g00318 215 PANTHER METHYLESTERASE FAMILY MEMBER 149 213 IPR045889 -
Lsi10g00318 215 PANTHER METHYLESTERASE FAMILY MEMBER 14 112 IPR045889 -
Lsi10g00318 215 SUPERFAMILY alpha/beta-Hydrolases 12 206 IPR029058 -
Lsi10g00318 215 Gene3D alpha/beta hydrolase 14 111 IPR029058 -
Lsi10g00318 215 PANTHER ESTERASE PIR7A-RELATED 149 213 - -
Lsi10g00318 215 PANTHER ESTERASE PIR7A-RELATED 14 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00318 - - - csv:101207795 323.553
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00318 Lsi-Chr10:5124845 Lsi11g01039 Lsi-Chr11:17873764 6.51E-63 dispersed
Lsi02g00926 Lsi-Chr2:9021451 Lsi10g00318 Lsi-Chr10:5124845 2.06E-64 transposed
Lsi01g01005 Lsi-Chr1:8322557 Lsi10g00318 Lsi-Chr10:5124845 6.58E-49 wgd
Lsi10g00318 Lsi-Chr10:5124845 Lsi11g01034 Lsi-Chr11:17829396 1.47E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g478 . . . . . . . . . . . . . . Sed10g2056 . . Bhi05g01159 Tan02g0871 Cmetu01g1249 . Hepe02g0559 . . . . . . . . . . Cone8ag1160 . . Lsi10g00318 . . . . . . . . . . . . . . . . . . . Cpe05g01229 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00318 Lsi_Chr10 FPKM 0.155324 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0