Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00320 ATGGTTTCTCGGAGAAAGAGATGCCGAGGAGGAGGCGCCGTCGTCGAAAATGGAACCGTTGCTGAGCTTCCTGCTCCAGGTTACGAGCAGCTTAGGGATCAAAGGGTTAGGGAAAATCAGGAGAGGATGCAGAAACTTGGCATTATCGAGCTTTCTCTCAAGCTTAAGTCCACCGTCGCTCCAAAACGATTTCCCAAAAATTGTTCTCAGAAGGAACCGCCCAACGGATCCCCTGCCGACGAACCCCAGAGGCGCTCTTCGAGGTTGAAGATATTGACTCCAGTTAGTTATGCAGAGATCGGTCCTAAAACTAAGAAGACAAATTCTAAAAGTAATGAGATTCGCATAAAAGAAGGCTCACAACCAGAAATTTACACAGAAGAAGATGCCAAGCTGTTGGGAGATTGTGAATCAAATTGGATTCTTGGTGTGGATGGATATGGTGAAGATGGGAAGCGTGTGTATGATCCCGTCAATGGAGAGTCGTGTCATCAATGCAGGCAGAAGACTCTTGGTCACCATACACATTGCAGCAAGTGTAAATTAGGCCAGGGGCAATTTTGTGGAGATTGCTTGTACACACGATATGGAGAGAATGTGATGGAAGTGAATTTGAATCCCAATTGGATCTGCCCAGTATGTCGAGGTATTTGCAACTGCAGTTTGTGTCGACAATCGAAAGGATGGATGCCGACTGGTGCTATATATAGAAAGGCCCACAATTTGGGTTTCAAGTCTGTGGCACATTATCTCATTCAAACCCGCTGCGATCAGACGAACCAGAAAGGCTCAACTTCAGAACATTTAGGTGCTGTAGATAGTTCACAAGCTTCAGCAAACACAGGATTGGAGAACGAACGACAGGAGCATGATGATGTCAATAGCCTCGACATCAAAGGACATGATCTTGATGAAAATTCACTCTATGATCAAGATCATATCATAGCTCTGAACTATGATATGAAGAATATTAGTTCCTTGCCTACAGAGCTGAAGACGTAA 1002 44.81 MVSRRKRCRGGGAVVENGTVAELPAPGYEQLRDQRVRENQERMQKLGIIELSLKLKSTVAPKRFPKNCSQKEPPNGSPADEPQRRSSRLKILTPVSYAEIGPKTKKTNSKSNEIRIKEGSQPEIYTEEDAKLLGDCESNWILGVDGYGEDGKRVYDPVNGESCHQCRQKTLGHHTHCSKCKLGQGQFCGDCLYTRYGENVMEVNLNPNWICPVCRGICNCSLCRQSKGWMPTGAIYRKAHNLGFKSVAHYLIQTRCDQTNQKGSTSEHLGAVDSSQASANTGLENERQEHDDVNSLDIKGHDLDENSLYDQDHIIALNYDMKNISSLPTELKT 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5140791 5145834 + Lsi10G003200.1 Lsi10g00320 671877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00320 333 MobiDBLite consensus disorder prediction 261 293 - -
Lsi10g00320 333 PANTHER OS05G0300700 PROTEIN 27 294 IPR040221 GO:0006355
Lsi10g00320 333 MobiDBLite consensus disorder prediction 63 91 - -
Lsi10g00320 333 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 155 251 IPR018866 -
Lsi10g00320 333 PANTHER ZINC-FINGER DOMAIN OF MONOAMINE-OXIDASE A REPRESSOR R1 27 294 - -
Lsi10g00320 333 MobiDBLite consensus disorder prediction 261 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00320 K23408 CDCA7, CDCA7L, JPO1; cell division cycle-associated protein 7 - csv:101222916 376.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00247 Lsi-Chr2:2103287 Lsi10g00320 Lsi-Chr10:5140791 2.56E-22 dispersed
Lsi07g00989 Lsi-Chr7:13606850 Lsi10g00320 Lsi-Chr10:5140791 8.44E-25 dispersed
Lsi10g00320 Lsi-Chr10:5140791 Lsi10g00627 Lsi-Chr10:8760156 1.16E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g501 . . . . . . . . . . Cma02g00432 . Car02g00287 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00320 . Chy11g00426 . . . . . . . . . . Cmo02g00434 . . . . . . Cpe05g01230 . . . . . . . Cla09g01728 Cam09g1822 Cec09g1882 Cco09g1975 . . Cre01g0686 . Csa02g01209 . Cme11g00249
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013673 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00320 Lsi_Chr10 FPKM 163.984344 184.324829 120.062439 119.107513 171.978745 192.185516 164.793991 181.451828 175.769226 180.632614