Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00322 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCTCCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGGAAAGCTGATAATAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCTATACGGGTTGGGTATTTATTAGTATTCAGATACGAGGGGAACTCGGCATTCTGTGTTTTTATCTTTAATCTTAATGCATCTGAAATAAACTACCAATCGGCTGCTCTCGGTAGTAATCAAAGGAATAATTACAGCATCCAAAACCGAATATTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCCGGTTCTTTGCGAAATAAGTTATTTGGTGATGAATGGAATCTGCACCAGTCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGCAAAAAGCGGAAAATGGAGTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGTGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTCGAACCCGGTAATCCTTTCTGCAGAGTCGTCTTGCGACCGTCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTCGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGAGAGGGCGACGTTTGTGTGTTCGAGCTTCTTAGGATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCAGACGAATGGCACCCCCAAATCCTGCTAGCATGATGAGTCCACCTCCGCTGCGAAGTGTTAGCCACATTAAGCTGATCAGAAATTAA 1239 42.29 MTDFSAFRTGGFKRKMPRPHFHKLVLSSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALGSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKMESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGRRMAPPNPASMMSPPPLRSVSHIKLIRN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5165014 5168379 + Lsi10G003220.1 Lsi10g00322 671879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00322 412 CDD B3_DNA 284 379 IPR003340 GO:0003677
Lsi10g00322 412 Gene3D - 263 383 IPR015300 -
Lsi10g00322 412 Pfam B3 DNA binding domain 24 110 IPR003340 GO:0003677
Lsi10g00322 412 Pfam B3 DNA binding domain 289 379 IPR003340 GO:0003677
Lsi10g00322 412 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677
Lsi10g00322 412 Gene3D - 13 114 IPR015300 -
Lsi10g00322 412 PANTHER B3 DOMAIN-CONTAINING 16 410 - -
Lsi10g00322 412 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 16 410 - -
Lsi10g00322 412 SUPERFAMILY DNA-binding pseudobarrel domain 281 381 IPR015300 -
Lsi10g00322 412 CDD B3_DNA 19 111 IPR003340 GO:0003677
Lsi10g00322 412 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Lsi10g00322 412 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Lsi10g00322 412 SMART B3_2 286 381 IPR003340 GO:0003677
Lsi10g00322 412 SMART B3_2 21 113 IPR003340 GO:0003677
Lsi10g00322 412 MobiDBLite consensus disorder prediction 216 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00322 Lsi-Chr10:5165014 Lsi10g00591 Lsi-Chr10:8560812 1.60E-37 dispersed
Lsi10g00322 Lsi-Chr10:5165014 Lsi10g00323 Lsi-Chr10:5175990 2.05E-65 tandem
Lsi01g01013 Lsi-Chr1:8407029 Lsi10g00322 Lsi-Chr10:5165014 1.49E-06 wgd
Lsi10g00322 Lsi-Chr10:5165014 Lsi08g01430 Lsi-Chr8:22538517 1.56E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26013 PF02362 B3 5.70E-18 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00322 - - csv:101213446 813.913