Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00329 ATGGCTGGGCTTTTGAAGAAGTTTTTCCATGAGAAGCCTTCTTCTCCTGTTAATGATGAGGATTTTACAGCTGAATATTCATTTGCCATCGAGTATAAAGGTCCTGGAATCAATTACGAGATTCCCTGTGCAGTTCCTATCAATGTTGATTATATTCCAACTGCTTCTGTTGTTCTTTCATCATCTCAGTTCAGCGATGATTTATCATCGCTGCCTGTGATACAACCTATTGTCAAGAAACTAAAGAGGGGCTCTAGTTCCAGCCCTAATTCTGTGATTTCTTCAACCTTGGAAGTCCAGGAAGATGGACCTGTTTGCCTCCATGCCAATAAGGAAGGTAATGGGGAAGATGAATGTAATATCAATTTGTGTGATGGAGTTGAAAGTTCTGGTGAACTTGAGAATTTCATTAAGCTGAAGGGAAGATTGGAAGGAAGGTTTGAATCATTGGAAATTAAGAATGAAGAGGAATTTCAAGGTTATACGAATTCCAGCGACTCGGAATCGGTAGAATCGGGTTTGAGCTCGTCTTCTGGGATTTTTGCAGTAAGAGAGGAAGAGGAAATTGACAATGAAACGCAGCCTCGGCATGGCAGAAGGCCATCAGCTGTTACCTTTCTTGATACCCATTCGAGCAACACAATTTCTGAAGAGGCAGAATCAAGTCAATTTGAGGGTGGAAGTATCCAAGAGATGCCTAGAGCTGAAAGGAAGGGGAAGAAAGGATCGTGCTACTACTGCCTTAAAGGAAACCGTTTCACTGAAAAGGAAGTATGTATAGTTTGTGGAGCCAAATATTGTTTTGACTGTGTAATAAGAGCAATGGGATCAATGCCAGAAGGAAGAAAGTGTATCTCTTGCATTGGGTTTAGGATTGACGAATCAAGAAGAGAGAAACTGGGTAAAAGCTCTAAAGTGCTCAAGAGGTTGCTTACTGACTCTGAAGTTAAGAGCACAATGTTGCGTGAGAAAGAGTGTGAAATAAATCAACTACCAGCAAGACTTGTTTACGTCAATGATGATCCTTTAAGTCGACAGGAGCTGCTTATATTGCGAAGTTGTGGAAAGCCACCAAAGAGTCTAAAACCAGGACGATATTGGTATGACAAAGAATCAGGCTTCTGGGGAAAGGAAGGACGTGGACCGAGTCAGATAGTTAGCTCCCAGCTAGAAGTTGGAGGTCGGATCAAGAGGAATGCTAGCAATGGCAATACAAATGTGTACATTAATAATCGAGAGATCACTAAAAAAGAGCTTCGGATACTGAAGATGGCTGGAGTACCTTGTGAAGGAAGACCTTCTTTTTGGGTTAGTGCAGATGGATCATATCAGGAAGAAGGAATGAACAATGGGGGGAAAATATGGGACAAGACTAGAACGAAGCTTGCATGTGCCCTTTTTTCTTTGCCTATTCCTTCTAATTCTGTTCATACTGGAGAGCAAATAGAGGACGGAGCTAGATCTGATTCTTCCGAGCAGAAAACGATTCATAAACTTCTACTTGTTGGCCACAAAAAATCTGGCACAAGTACCATATTTAAGCAGGCCAAACAAATATATAAAGTTCCTTTCTCTGATGACGAGCGCCAAACCATTAAGTTCCTGATTCAAAGGAACTTGTATTGGTATCTTAGTATACTACTAGAAGGACGGGAACGTTTTGAAGAAGAGAGTTTGATGGATGAGAAAAATAAACCACCAGTGAATGATCCGTCCACCTCATCAGCATCAGGGAATGAAAATCAGTTGGAGCGTAAGACCAGCTATTCCCTTGGCCCTAAACTGAAAGGATTTGCAGATTGGCTTCTTCAAGTCGTGGTGTCGGGTAACTTCGAAACCGTCTTCCCGGCTGCCACTCGTGTGTATGCCCAATTAGTGGAAGAGTTATTGAAGGATGACGCCTTCCAAGCCACATACAGTAGAAGGAACGAACTAGAACTGCTCCCAAGAGTTGCTACTTATTTTCTTGATCGGGCAATTGACATTTCAAGTATAGAGTATGACCCTTCTGACAATGATATCTTGTATGCCGAGGGAATCTCCTCGTGTAACAGTCTCAGTACCATGGAGTTCAAGTTCCCCGAGTCACGACAAGACTCCATTCTCGATCCTCCTTATCAGCATGATTTGTCAATAAGGTACCAGCTGATTCGAGCCCATTCCAGTACTCTGGGAGAGAACTGCAAATGGTTGGAGATGTTTGAAGACATGAGCATAATCATATTTTGCGTTGATTTGACCGATTATGATGAATTTGACGAGGATGATAACGGAGATCTAATGAACCGGATGATCGCAAGCAAGAAACTCTTTGAAAGCATTGTGACACATCGAGCCTCGAGAGGAAATAACTTCCTTCTCATACTCAACAAGTTTGATCTCTTCGAAGAAAAGATCATCCAAGTTCCTCTTGCCCAATGTGAGTGGTTCGTCGACTTCAATCCAATGATCACTGGAAGAAGTAGCAGCAGCACGAACCCGACACTGGCCCAACGAGCGTTTCAGTACATAGCAGTGAAATTCAAGAGATTGTTCTGTTCTTTGACAGACAAAAAGTTGTTTGTTTCACAAACTACAGGTATGGAGCCTGAAAATGTCAATGCAGCTCTCAGATATGCAAGGGAGATAATCAAATGGCAAGTAGACAAACCTAATATCAGCATTACTGAAATTTCAAGTACCAGTGTTGATGCAAGCAGCTTCACATAG 2709 42.08 MAGLLKKFFHEKPSSPVNDEDFTAEYSFAIEYKGPGINYEIPCAVPINVDYIPTASVVLSSSQFSDDLSSLPVIQPIVKKLKRGSSSSPNSVISSTLEVQEDGPVCLHANKEGNGEDECNINLCDGVESSGELENFIKLKGRLEGRFESLEIKNEEEFQGYTNSSDSESVESGLSSSSGIFAVREEEEIDNETQPRHGRRPSAVTFLDTHSSNTISEEAESSQFEGGSIQEMPRAERKGKKGSCYYCLKGNRFTEKEVCIVCGAKYCFDCVIRAMGSMPEGRKCISCIGFRIDESRREKLGKSSKVLKRLLTDSEVKSTMLREKECEINQLPARLVYVNDDPLSRQELLILRSCGKPPKSLKPGRYWYDKESGFWGKEGRGPSQIVSSQLEVGGRIKRNASNGNTNVYINNREITKKELRILKMAGVPCEGRPSFWVSADGSYQEEGMNNGGKIWDKTRTKLACALFSLPIPSNSVHTGEQIEDGARSDSSEQKTIHKLLLVGHKKSGTSTIFKQAKQIYKVPFSDDERQTIKFLIQRNLYWYLSILLEGRERFEEESLMDEKNKPPVNDPSTSSASGNENQLERKTSYSLGPKLKGFADWLLQVVVSGNFETVFPAATRVYAQLVEELLKDDAFQATYSRRNELELLPRVATYFLDRAIDISSIEYDPSDNDILYAEGISSCNSLSTMEFKFPESRQDSILDPPYQHDLSIRYQLIRAHSSTLGENCKWLEMFEDMSIIIFCVDLTDYDEFDEDDNGDLMNRMIASKKLFESIVTHRASRGNNFLLILNKFDLFEEKIIQVPLAQCEWFVDFNPMITGRSSSSTNPTLAQRAFQYIAVKFKRLFCSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWQVDKPNISITEISSTSVDASSFT 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5239161 5245092 - Lsi10G003290.1 Lsi10g00329 671886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00329 902 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 15 900 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi10g00329 902 MobiDBLite consensus disorder prediction 207 234 - -
Lsi10g00329 902 Pfam G-protein alpha subunit 480 877 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi10g00329 902 MobiDBLite consensus disorder prediction 157 177 - -
Lsi10g00329 902 Gene3D - 252 331 - -
Lsi10g00329 902 PRINTS Alpha G protein (transducin) signature 498 513 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi10g00329 902 PRINTS Alpha G protein (transducin) signature 785 794 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi10g00329 902 PRINTS Alpha G protein (transducin) signature 737 765 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi10g00329 902 MobiDBLite consensus disorder prediction 207 228 - -
Lsi10g00329 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 880 IPR027417 -
Lsi10g00329 902 ProSiteProfiles G-alpha domain profile. 495 889 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi10g00329 902 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 15 900 - -
Lsi10g00329 902 MobiDBLite consensus disorder prediction 567 584 - -
Lsi10g00329 902 SMART galpha_1 476 886 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi10g00329 902 MobiDBLite consensus disorder prediction 558 584 - -
Lsi10g00329 902 Gene3D - 685 883 IPR027417 -
Lsi10g00329 902 CDD G-alpha 497 880 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi10g00329 902 Gene3D - 525 678 IPR011025 GO:0007165
Lsi10g00329 902 SUPERFAMILY Transducin (alpha subunit), insertion domain 524 677 IPR011025 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00329 - - - csv:101202880 1572.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00705 Lsi-Chr7:7568293 Lsi10g00329 Lsi-Chr10:5239161 8.90E-09 dispersed
Lsi07g01155 Lsi-Chr7:17011473 Lsi10g00329 Lsi-Chr10:5239161 1.11E-62 dispersed
Lsi02g01208 Lsi-Chr2:15506319 Lsi10g00329 Lsi-Chr10:5239161 3.10E-06 transposed
Lsi01g01019 Lsi-Chr1:8445038 Lsi10g00329 Lsi-Chr10:5239161 7.49E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00329 Lsi_Chr10 FPKM 0.822753 0.937769 0.577471 0.677131 2.807209 3.151736 3.412483 0.978545 1.203465 0.911002