Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00332 ATGCCGATCTCCCCTTCTCCTTCCCCTTCCGCCGCCCTCAATTTCCCTCCCCCCTCCTCCTTACAGCCGGCGAAGCTCCCTGTCGACTTCAGTCCCCCTTTAATCGCCATGGTTGTCGTCATCGCTACTGCCTTTCTCATCGTCACTTACTCTCGTCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGCCGTCGCTGGCGTCGCTGGCGCCGCCGACGTCGACGCGCCCGATCTTACCTCCCATCCTCCTCTGGCGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTTCAGATGGCTTCCATGTTTTCTCTCCGTACGGTCTCGACGAATCCGTAATCAAGACGATTCCACTCTCCGTCTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTGGAGTTTGAAGACGATGATTACGTCAGAACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTCTGTCGCGCGGTGGTTTTCAGGCCGGAATCTCCGTTCACGCCGGTTATGGCGGCTAGAATCCGGCCAAGTCTTGATGATACGATCTTACGGAGCATCGTATTAGAACCGCTCGTGGAAGGTCCTATTCCTAATCGAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTTGAGGATCAAATGAACGGACGAGATTTCTTGTTGAAGCGATCGTATTCATTCGGATTCGAACGGAACTTAGCGTCGGAGAGAATGATTTTGGAACCAGCGACGACGTCTCCATGGAGATACCGTCGTGGAAGCTTCTGGAGCAAACGTCCATCGCCGTTCGGATCTCTACCGAAGGCGAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGAAGAGGAGGATTTTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCGTCTAGACGGAGTAAGTCAATGACGAGTCCAATGTTTCTCCGATCGTCGGTAACCGGCGGTGGAGCAGCAGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCCGAGGCGTTATTATCACCGGAGAGATTCAACCGAAGATGA 1188 53.54 MPISPSPSPSAALNFPPPSSLQPAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPSDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNRDSYHATESEITPCVDEPRNSNSVEDQMNGRDFLLKRSYSFGFERNLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGAAAFSSSRLRCGDPEALLSPERFNRR 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5295309 5296496 - Lsi10G003320.1 Lsi10g00332 671889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00332 395 Pfam Ring finger domain 140 183 IPR001841 -
Lsi10g00332 395 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 366 - -
Lsi10g00332 395 SUPERFAMILY RING/U-box 137 189 - -
Lsi10g00332 395 CDD RING-H2_PA-TM-RING 140 183 - -
Lsi10g00332 395 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Lsi10g00332 395 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 366 IPR044675 -
Lsi10g00332 395 SMART ring_2 141 182 IPR001841 -
Lsi10g00332 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01983 Lsi-Chr2:25743639 Lsi10g00332 Lsi-Chr10:5295309 4.09E-06 dispersed
Lsi09g01242 Lsi-Chr9:20077373 Lsi10g00332 Lsi-Chr10:5295309 2.34E-21 dispersed
Lsi10g00332 Lsi-Chr10:5295309 Lsi09g01100 Lsi-Chr9:17598438 1.56E-22 dispersed
Lsi10g00332 Lsi-Chr10:5295309 Lsi05g01721 Lsi-Chr5:24660912 4.45E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00332 - K19041 csv:101206300 657.907