Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00335 ATGGGGAAAGGGGGCGGATGCGTACCTAGCAAGAACAGAGCATCGGTAGCCGTCTCCGATCCACATCCAACTCCCGATCAACCAAAATCCATCGCCGGAGAAATCTCCAGAAATCTCAGGATCTTCATCGTCTATTACTCCATGTACGGTCACGTCCACCTCTTGGCGAAGATGATGAAGAAAGGAGTTGATTCTGTAGATGGCGTCGAAGGTATTTTGTTTAAGGTGCCGGAGACGCTGCCGTTGGAGACGCTGGAGCAGATGAGAGTTCCGGTGAAGGACGACGGCGTGCCGGTGATTTCCGTGGACGAGATGGTGGAGGCGGACGGATTCTTGTTTGGATTTCCGACGAGGTATGGATCCATGGCGGCGCAGATGAAGTCGTTTTTTGATTCGACGATTGATCTTTGGGAGGATCAGAGGCTGGCCGGAATTCCTGCCGGATTCTTTGTCAGTACTGGAACCCAAGGCGGCGGCCAAGAGACGACGGCCTTAACAGCAGTGACTCTTCTAGCACATCATGGGATGGTGTATGTTCCAATAGGGTACACTTTTGGGAGTGAAATGACCAATTTGGAGTCCATAAGAGGAGGATCCCCATATGGGGCTGGAGTTTTCTCTGGTGATGGCTCAAGACCTCCATCTTCCACTGAGATTGATCTTGCTCATTATCAAGGCAAGTATATGGCTACCCTACTTAAAAAATCCCTTCCTCTCCACGCTCGTTAA 729 50.89 MGKGGGCVPSKNRASVAVSDPHPTPDQPKSIAGEISRNLRIFIVYYSMYGHVHLLAKMMKKGVDSVDGVEGILFKVPETLPLETLEQMRVPVKDDGVPVISVDEMVEADGFLFGFPTRYGSMAAQMKSFFDSTIDLWEDQRLAGIPAGFFVSTGTQGGGQETTALTAVTLLAHHGMVYVPIGYTFGSEMTNLESIRGGSPYGAGVFSGDGSRPPSSTEIDLAHYQGKYMATLLKKSLPLHAR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5308577 5313479 - Lsi10G003350.1 Lsi10g00335 671892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00335 242 Gene3D - 38 236 IPR029039 -
Lsi10g00335 242 PANTHER NAD(P)H DEHYDROGENASE (QUINONE) FQR1-LIKE 2-RELATED 32 236 - -
Lsi10g00335 242 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 32 236 - -
Lsi10g00335 242 MobiDBLite consensus disorder prediction 1 31 - -
Lsi10g00335 242 Pfam NADPH-dependent FMN reductase 55 182 IPR005025 GO:0016491
Lsi10g00335 242 ProSiteProfiles Flavodoxin-like domain profile. 41 229 IPR008254 GO:0010181
Lsi10g00335 242 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 40 235 IPR010089 GO:0003955|GO:0010181
Lsi10g00335 242 SUPERFAMILY Flavoproteins 40 235 IPR029039 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00335 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - csv:101211762 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00700 Lsi-Chr1:5588466 Lsi10g00335 Lsi-Chr10:5308577 8.34E-110 dispersed
Lsi05g00642 Lsi-Chr5:7981890 Lsi10g00335 Lsi-Chr10:5308577 2.07E-54 dispersed
Lsi10g00335 Lsi-Chr10:5308577 Lsi10g01425 Lsi-Chr10:18352021 3.29E-67 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g556 . Blo15g00688 Bda06g00948 . Bpe07g00459 . . Bma12g00546 . . Cma02g00425 . Car02g00281 . . . . . . . . . . . . . . . . . . . . Cone3ag1142 . Lsi10g00335 . Chy11g00416 . . . . . . . . . . Cmo02g00426 . . . . . . Cpe05g01236 . . . . . . . Cla09g01743 Cam09g1834 Cec09g1895 Cco09g1987 . . Cre01g0676 . Csa02g01222 . Cme11g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00335 Lsi_Chr10 FPKM 5.500837 4.556923 2.180037 2.683034 17.42783 17.298876 14.998445 8.709404 7.511813 5.82675