Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00340 ATGGAAGGATTAATACGACGTCGTATAACCTTTGCTCTCTTCTCTTTTTATCTTCTCTCTCACAAATTTTGCTCTCTTTTTCTCTTTTTATTTATTTATATTTATTTTATATTTATATTTTACTTATTTCATCGGAAGAACTCCCACCATTTAGTCGTTGTCCTTTCACTCTCTTCGCCGGATTTTCCAACGATCTTCCCGGAGGGAAACGTTCTCCGGCGTTTCCCGATTTCTCCGGATCCGATTTATTCATCGAATCTCGTTATCGATTGTTTCGTTTTGCTTTTCTTTTTCCCCTTTTTTGTATTACCCACTCAGCTTTGCCTTTCTTCTTTCAATCTGACTTCAATTTCTTCTTCTCTTTCCCCAATTCCCTTTCCCTATTTCTCAATGGACGACTGTATCAGCAGCGATGAGGACTACTATGACTCCGATCGAGATTCTCTACATGGTCTTGAGAACGAGGACTCTGAAATTCAGTGGGTTCCTAAAGGTCCCGCGACTAAGGTTATTACGAAAGAGTCTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTAATGGACTTGCTATCGTTGAGGGAGTACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCATTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAATAGTTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGACTACGATGCAACAAGAGTGGATTGTGGCCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGGTGCATGGCCCACAAATGTAATGCGATTTGTGATGAAGCTGTCGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCTAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGTACTCCTCATTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTATTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCTGTCGAGAAGAATGGAGGTTGTAACCTTGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGTCGAGAGCACACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTATCGGTATATGCACTATCATAATCGGTATAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCTATACAAGAGAAAATCTCGATTTCGGAAGAGAGGGAATCCATGCTTAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCATACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAACGAGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAGGAGCCGTTTGAGCAATATACTAAAGATAAGGTAATGGAGATACGGATGCAAGTTATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGACAAATATCCACCATCAGACTGTGGTACAAGTGGAGGATTGTCGGAATGTGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGACCTTAACTTGCCTGCCGAGGTTGTTGATAGAAACTGA 2160 41.62 MEGLIRRRITFALFSFYLLSHKFCSLFLFLFIYIYFIFIFYLFHRKNSHHLVVVLSLSSPDFPTIFPEGNVLRRFPISPDPIYSSNLVIDCFVLLFFFPFFVLPTQLCLSSFNLTSISSSLSPIPFPYFSMDDCISSDEDYYDSDRDSLHGLENEDSEIQWVPKGPATKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNSSSEPSSMVMCDICMEEVHDYDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGIQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFEQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVTGNFFDLNLPAEVVDRN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5354460 5359728 + Lsi10G003400.1 Lsi10g00340 671897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00340 719 Pfam IBR domain, a half RING-finger domain 321 382 IPR002867 -
Lsi10g00340 719 SUPERFAMILY RING/U-box 244 332 - -
Lsi10g00340 719 SUPERFAMILY RING/U-box 321 389 - -
Lsi10g00340 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 334 IPR013083 -
Lsi10g00340 719 SMART ibrneu5 390 455 IPR002867 -
Lsi10g00340 719 SMART ibrneu5 320 382 IPR002867 -
Lsi10g00340 719 ProSiteProfiles Zinc finger RING-type profile. 249 297 IPR001841 -
Lsi10g00340 719 Pfam Ariadne domain 459 719 IPR045840 -
Lsi10g00340 719 ProSiteProfiles TRIAD supradomain profile. 245 459 IPR044066 -
Lsi10g00340 719 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 135 645 - -
Lsi10g00340 719 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 135 645 IPR031127 GO:0004842|GO:0016567
Lsi10g00340 719 SUPERFAMILY RING/U-box 390 447 - -
Lsi10g00340 719 Gene3D - 378 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00340 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1156.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00340 Lsi-Chr10:5354460 Lsi11g00931 Lsi-Chr11:13382397 2.73E-51 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00340 . 294 719 ARIADNE family AT4G34370 72.0 3.8e-183 637.9
Lsi10g00340 . 188 672 ARIADNE family AT2G16090 77.0 1.0e-224 776.2
Lsi10g00340 . 168 673 ARIADNE family AT3G27710 61.4 1.8e-182 636.0
Lsi10g00340 . 174 652 ARIADNE family AT3G27720 53.8 2.9e-142 502.3
Lsi11g00931 . 1 570 ARIADNE family AT1G05890 60.8 5.8e-214 740.7
Lsi08g00360 . 86 512 ARIADNE family AT1G05890 76.1 1.3e-202 703.0
Lsi11g00931 . 19 625 ARIADNE family AT1G65430 69.7 7.1e-254 873.2
Lsi08g00360 . 16 572 ARIADNE family AT1G65430 65.1 3.0e-220 761.5
Lsi11g00931 . 13 488 ARIADNE family AT2G31780 52.0 1.0e-143 506.9
Lsi08g00360 . 51 437 ARIADNE family AT2G31780 55.0 2.5e-129 459.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00340 Lsi_Chr10 FPKM 50.736832 54.8601 0.064091 0.0 0.0 0.0 0.0 0.0 0.0 0.0