Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00340 ATGGAAGGATTAATACGACGTCGTATAACCTTTGCTCTCTTCTCTTTTTATCTTCTCTCTCACAAATTTTGCTCTCTTTTTCTCTTTTTATTTATTTATATTTATTTTATATTTATATTTTACTTATTTCATCGGAAGAACTCCCACCATTTAGTCGTTGTCCTTTCACTCTCTTCGCCGGATTTTCCAACGATCTTCCCGGAGGGAAACGTTCTCCGGCGTTTCCCGATTTCTCCGGATCCGATTTATTCATCGAATCTCGTTATCGATTGTTTCGTTTTGCTTTTCTTTTTCCCCTTTTTTGTATTACCCACTCAGCTTTGCCTTTCTTCTTTCAATCTGACTTCAATTTCTTCTTCTCTTTCCCCAATTCCCTTTCCCTATTTCTCAATGGACGACTGTATCAGCAGCGATGAGGACTACTATGACTCCGATCGAGATTCTCTACATGGTCTTGAGAACGAGGACTCTGAAATTCAGTGGGTTCCTAAAGGTCCCGCGACTAAGGTTATTACGAAAGAGTCTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTAATGGACTTGCTATCGTTGAGGGAGTACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCATTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAATAGTTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGACTACGATGCAACAAGAGTGGATTGTGGCCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGGTGCATGGCCCACAAATGTAATGCGATTTGTGATGAAGCTGTCGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCTAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGTACTCCTCATTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTATTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCTGTCGAGAAGAATGGAGGTTGTAACCTTGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGTCGAGAGCACACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTATCGGTATATGCACTATCATAATCGGTATAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCTATACAAGAGAAAATCTCGATTTCGGAAGAGAGGGAATCCATGCTTAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCATACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAACGAGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAGGAGCCGTTTGAGCAATATACTAAAGATAAGGTAATGGAGATACGGATGCAAGTTATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGACAAATATCCACCATCAGACTGTGGTACAAGTGGAGGATTGTCGGAATGTGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGACCTTAACTTGCCTGCCGAGGTTGTTGATAGAAACTGA 2160 41.62 MEGLIRRRITFALFSFYLLSHKFCSLFLFLFIYIYFIFIFYLFHRKNSHHLVVVLSLSSPDFPTIFPEGNVLRRFPISPDPIYSSNLVIDCFVLLFFFPFFVLPTQLCLSSFNLTSISSSLSPIPFPYFSMDDCISSDEDYYDSDRDSLHGLENEDSEIQWVPKGPATKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNSSSEPSSMVMCDICMEEVHDYDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGIQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFEQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVTGNFFDLNLPAEVVDRN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5354460 5359728 + Lsi10G003400.1 Lsi10g00340 671897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00340 719 Pfam IBR domain, a half RING-finger domain 321 382 IPR002867 -
Lsi10g00340 719 SUPERFAMILY RING/U-box 244 332 - -
Lsi10g00340 719 SUPERFAMILY RING/U-box 321 389 - -
Lsi10g00340 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 334 IPR013083 -
Lsi10g00340 719 SMART ibrneu5 390 455 IPR002867 -
Lsi10g00340 719 SMART ibrneu5 320 382 IPR002867 -
Lsi10g00340 719 ProSiteProfiles Zinc finger RING-type profile. 249 297 IPR001841 -
Lsi10g00340 719 Pfam Ariadne domain 459 719 IPR045840 -
Lsi10g00340 719 ProSiteProfiles TRIAD supradomain profile. 245 459 IPR044066 -
Lsi10g00340 719 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 135 645 - -
Lsi10g00340 719 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 135 645 IPR031127 GO:0004842|GO:0016567
Lsi10g00340 719 SUPERFAMILY RING/U-box 390 447 - -
Lsi10g00340 719 Gene3D - 378 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00340 Lsi-Chr10:5354460 Lsi11g00931 Lsi-Chr11:13382397 2.73E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00340 K11968 - csv:101205066 1156.35