Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00353 ATGGTAGTAGCTTCAGCTTTTACTGCCTCTCTCAGTTTCTCTGTCTCTTCACACAATCGAACGTCGTCCATTCCTCAACTTTCTCGAAGGTCGATAGTGTCTGCCTTGCCGAGGCCCTATGACGACCCTTCGACAATTGGATTATCGAGTAAAACAATTGGGGCACCTCTAACCCTTGACGATAAGGACTTTCTTCACACCAGTACAAGTTATGGTCCTATAGTGGCTAGGAAAGGTAATCCACCCATTATGCCTGCAGTGATGACACCAGGAGGGCCTTTGGATCTCTCTTCTGTGTTATTTAGGAATCGTATTATATTTATTGGTCAACCTGTCAACTCAATTGTGGCACAGCGAGTCATATCACAGCTTGTGACTCTAGCAACAATTGATGAGGATGCTGATATCCTGGTATATCTGAATTGCCCTGGTGGAAGTACATACTCGGTATTGGCAATTTATGATTGTATGTCTTGGATAAAGCCGAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGCTATGCTATGCCCAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGGTCATGTGGAGGATGTTAGGCGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAATTGACAAGATGTATGCTGCATTTACTGGCCAGACTATAGAGAAAGTACAACAATACACGGAGAGGGATCGATTTTTGTCTGTTTCCGAGTCTGCGGAATCATCTTCTCCAAGCTTTGGTACAGAACATCAAAATTTCAGTCCAAATTTCCAGCGCTGTGCATCGTTTCATTGGTAA 852 44.84 MVVASAFTASLSFSVSSHNRTSSIPQLSRRSIVSALPRPYDDPSTIGLSSKTIGAPLTLDDKDFLHTSTSYGPIVARKGNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSIVAQRVISQLVTLATIDEDADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYAAFTGQTIEKVQQYTERDRFLSVSESAESSSPSFGTEHQNFSPNFQRCASFHW 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5525270 5529276 + Lsi10G003530.1 Lsi10g00353 671910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00353 283 PRINTS Clp protease catalytic subunit P signature 166 183 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi10g00353 283 PRINTS Clp protease catalytic subunit P signature 95 110 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi10g00353 283 PRINTS Clp protease catalytic subunit P signature 135 155 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi10g00353 283 PRINTS Clp protease catalytic subunit P signature 187 206 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi10g00353 283 PRINTS Clp protease catalytic subunit P signature 244 263 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi10g00353 283 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 13 258 - -
Lsi10g00353 283 Gene3D - 81 259 - -
Lsi10g00353 283 CDD S14_ClpP_2 95 251 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi10g00353 283 ProSitePatterns Endopeptidase Clp histidine active site. 188 201 IPR033135 -
Lsi10g00353 283 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 258 IPR023562 -
Lsi10g00353 283 SUPERFAMILY ClpP/crotonase 94 256 IPR029045 -
Lsi10g00353 283 Pfam Clp protease 95 257 IPR023562 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00353 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101213940 437.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01130 Lsi-Chr7:16740003 Lsi10g00353 Lsi-Chr10:5525270 2.64E-42 dispersed
Lsi09g00370 Lsi-Chr9:3854668 Lsi10g00353 Lsi-Chr10:5525270 1.80E-31 dispersed
Lsi11g00589 Lsi-Chr11:6245580 Lsi10g00353 Lsi-Chr10:5525270 1.95E-16 dispersed
Lsi10g00353 Lsi-Chr10:5525270 Lsi05g00283 Lsi-Chr5:3685879 1.75E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00353 Lsi_Chr10 FPKM 4.170467 5.734782 8.770297 9.97239 12.530117 10.728741 12.726888 11.157366 11.529158 12.71279