Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00357 ATGTCTTCTTCATCCGATTCTCCTTCCCCTTCTTCTGATTCTGCTTCCTCTTCTCCCCCTCCTTCTCCACCTCCTCCCACTGCCCCACCACCTGATGCTTCTCCACCTCCCCCGGATTCTTCCTCCTCTTCTCCTCCTCCGCCGGATTCTTCTCCTCCTCCTCCACCCGATGATTCTTCTCCACCTCCGCCAGATGCATCGCCGCCACCGCCGCCTTCCGAATCCTCGCCGCCTTCTGATGATTCCTCTTCTTCACCGCCACCGCCGAAGGATTCCAACTCTTCTTCTCCTCCATCTCCTCCGCCGCCACCGCCGCCTCCACCACCGCCGCCACCGCCGCCTCCGCCGCATGGGTCTTCAAGGCATTCTCCGCCTTCTCCGAGATCGATCAACTCAGGATCCTCAGACTCCTCGTCCGGCGGCTCGGCACCCCAGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCAGGGTTTTTGCTTTTCGCCATGGCGTTGATATTCTTCGCTTGTAGCCGAAAGAAAAAGAAGCAAAATAGTAATTCCATGTATTTCGACGAACAGTCCGGTCCGAAAGGTGGGGATCCATATTACAACGGAAGGAATCACAACTGGAACAACCCGAGCGAACATTTCGTGAACATGGCGGCAATCAGCGGCGGAGGCCAAGGAGGAGGGTGGCCATCGCCGCCGCCACCTCCACCGCCGGGATTAGTCAGCAGTGACATGAGCTCGAATTTCTCAGGGCCACATGGACCACCGTTGCCGCCGCCGCACCCATCGGTGGCGCTGGGGTTCAATAAGAGCACTTTCACGTACGACGAGCTGATGGCGGCGACGGGTGGATTCTCTCCGGCGAATCTGTTGGGGCAAGGGGGATTCGGGTACGTTCACAAAGGATTGCTGCCCAACGGCAAGGAAATTGCAGTGAAAAGCTTGAAAACGGGAAGCGGGCAAGGAGATCGAGAATTCGCGGCGGAGGTGGAGATTATCAGCCGCGTCCACCACCGCCATTTGGTGTCCCTTGTCGGATATTGCATCGCCGGTGAACGGAAGATGTTGGTTTACGAATTTGTCCCTAATAACAACCTCGAATTCCACCTTCACGGCAAGGGGCGACCACCATTGGACTGGTCGACCAGAGTGAAGATCGCATTGGGCTCAGCCAAGGGCCTCGCCTATCTCCACGAAGACTATGTATTCTCATTTGGAGTAATGCTTTTGGAACTGATAACCGGAAGACGACCGGTGGACACGACGGGGGAAATGGAAGACAGCTTAGTGGACTGGTCAAGGCCTCTTTGTACGAAAACAGTGACTGATGGAAACTATGAAGAGTTGGCTGATTCACGGTTGGAGAAGAACTATGATGCCCAAGAAATGGCTTGCATGGTGGCTTGCGCCGCCGCTTGCATTCGCCATTCAGCTCGGCGCCAGGACTTGAACGACGGAGTAAAGCCCGGGCAAAGCTCATACTTCGGGTCTGGCACGTCCTCTGAGTACGATGCAAGCTCCTACAGTGCCGACATGAAGAGGTTTCGAAAGGTGGCGTTGGACAGCCGCGAGTACACAAGCAGCGATTATGGTGGTACTAGCGAGTACGGCTTAAACCCTTCCTCAACAAGCAGCGACTGCTTGGTTGTTGAATTTGTGATTATCATTGTCGTCATGAGTAAAAAGCTTGGACCGGCCGATTGA 1698 55.71 MSSSSDSPSPSSDSASSSPPPSPPPPTAPPPDASPPPPDSSSSSPPPPDSSPPPPPDDSSPPPPDASPPPPPSESSPPSDDSSSSPPPPKDSNSSSPPSPPPPPPPPPPPPPPPPPHGSSRHSPPSPRSINSGSSDSSSGGSAPQAVPIIVGVAVAAGFLLFAMALIFFACSRKKKKQNSNSMYFDEQSGPKGGDPYYNGRNHNWNNPSEHFVNMAAISGGGQGGGWPSPPPPPPPGLVSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELMAATGGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCIAGERKMLVYEFVPNNNLEFHLHGKGRPPLDWSTRVKIALGSAKGLAYLHEDYVFSFGVMLLELITGRRPVDTTGEMEDSLVDWSRPLCTKTVTDGNYEELADSRLEKNYDAQEMACMVACAAACIRHSARRQDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYTSSDYGGTSEYGLNPSSTSSDCLVVEFVIIIVVMSKKLGPAD 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5574081 5579342 + Lsi10G003570.1 Lsi10g00357 671914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00357 565 SUPERFAMILY Protein kinase-like (PK-like) 258 427 IPR011009 -
Lsi10g00357 565 Gene3D Transferase(Phosphotransferase) domain 1 360 400 - -
Lsi10g00357 565 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 400 530 - -
Lsi10g00357 565 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 11 398 - -
Lsi10g00357 565 ProSiteProfiles Protein kinase domain profile. 283 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00357 565 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 400 530 - -
Lsi10g00357 565 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 11 398 - -
Lsi10g00357 565 Gene3D Transferase(Phosphotransferase) domain 1 401 482 - -
Lsi10g00357 565 MobiDBLite consensus disorder prediction 14 122 - -
Lsi10g00357 565 MobiDBLite consensus disorder prediction 1 144 - -
Lsi10g00357 565 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Lsi10g00357 565 Pfam Protein tyrosine and serine/threonine kinase 288 397 IPR001245 GO:0004672|GO:0006468
Lsi10g00357 565 Gene3D Phosphorylase Kinase; domain 1 260 358 - -
Lsi10g00357 565 MobiDBLite consensus disorder prediction 123 144 - -
Lsi10g00357 565 MobiDBLite consensus disorder prediction 177 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00207 Lsi-Chr7:2259547 Lsi10g00357 Lsi-Chr10:5574081 2.24E-51 dispersed
Lsi10g00357 Lsi-Chr10:5574081 Lsi03g00221 Lsi-Chr3:2790686 1.68E-66 dispersed
Lsi10g00357 Lsi-Chr10:5574081 Lsi11g00260 Lsi-Chr11:2621815 1.19E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83944 PF07714 PK_Tyr_Ser-Thr 1.80E-19 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00357 - - csv:101217306 408.683