Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00358 ATGGCTCAGCCTCTTGTCAAGAAGGACGACGACTACGACGACGAAGAGGAATATTCTCCGTTTTTGGGGATTGAGAAAGGTACTGTTCTTCAGGAAGCAAGGGTATTCAATGATCCTCAGCTAGACACAAGGAAATGCTCCCAGGTCATAACGAAGCTTTTGTATCTTCTCAACCAAGGTGAAACCTTCACAAAGGTTGAAGCTACAGAAGTGTTCTTTGGTGTGACTAAGCTCTTCCAGTCTAGAGACATAGAATTGAGGAGAATGGTCTATTTAATGATAAAAGAGCTCTCTCCATCTTCTGATGATGTTATTATTGTGACAAGCTCCCTGATGAAAGACATGAACAGCAAGAATGATATGTACCGTGCTAATGCTATACGTGTACTTTGTAGAATTACAGATGGTACCTTACTCACCCAAATTGAGCGGTATTTGAAACAAGCAATTGTGGACAAAAACCCAGTGGTTGCTAGTGCAGCCTTAGTTAGTGGGATTCATTTACTCCAGACCAATCCTGAGATTGTAAAGCGATGGAGTAATGAGGTCCAGGAAGCTGTTCAGTCAAGGGCACCACTTGTACAATTTCATGCCTTGGGTTTGCTTCATCAGATTCGTCAGAATGATCGTTTAGCTGTTAACAAGTTGGTTAGTAGCTTGACGCGGGGCACTGCTCGCTCTCCTTTGGCCCAATGCCTTTTGGTTCGTTATGCCAGTCAGGTTGCTAGTGAATCAGCTGCTAATAGTCAAACTGGGGATCGACCATTATATGATTTTCTCGACAGTTGTCTGCGGCACAAATCAGAGATGGTCATCCTTGAGGCTGCCAGAGCTATTGCAGAACTAAATGGTGTGACAAGCAGAGAAGTTACTCCAGCAATTACTGTACTTCAGCTCTTTTTAAACTCTCCCAAGCCAGTATTGAGATTTGCTGCCATCCGTACTCTGAACAAGGTGGCAATGACACATCCAATGGCTGTCACGAACTGTAACATTGATATGGAGAGTTTGATTTCAGACCAGAACAGAAGCATTGCAACTCTTGCAATAACCACACTTCTAAAGACTGGAAATGAGTCAAGTGTGGATCGCCTGATGAAGCAGATAACAAACTTTATGTCAGATATTGCTGATGAATTTAAAATTGTAGTTGTGGATGCCATTAGATCCCTGTGTTTGAAGTTTCCATTGAAGTACAGATCTCTGATGAACTTCCTATGCAACATTCTCAGAGAAGAAGGTGGATTTGAGTACAAAAAGGTGATAGTTGATTCAATTGTGATCCTTATTAGAGATATACCTGAAGCAAAAGAAAATGGTTTGCTTCATTTGTGTGAGTTCATAGAGGACTGCGAATTCACTTATCTTTCCACACAGATACTTCACTTTTTGGGAATTGAAGGTCCGAAAGCCTCAGATCCTAGCAAGTATATACGTTATATATATAATCGTGTACATCTTGAGAATGCAACTGTTCGAGCTTGTGCAGTGAGCACTTTGGCAAAGTTTGCTGTCATGGTTGATTCGTTGAAGCCCCGAATATATGTTCTCCTTCGACGATGCCTTTTTGACAGTGACGATGAGGTTCGTGATAGGGCAACCCTTTATCTTAAGACACTTGGAGCAGATGGTTCAGTTCTTGAAAATGAGAAAGACGTGCAAGAAATTCTTTTTGGCTCTCTAGACTTGCCACTGGTGAATCTGGAGACCAGTTTGAAAAACTATGAACCGTCTGAAGAACCGTTTGATCTTGATTCTGTACCTAAGGAGATGAAATCCCTACCACTTGCTGAGAAGAAAGGCAGTAGTAAAAAATCGAATGGGCTTGGGGCTCCTCCCATTACCCTTGCTTCTTCTGTTGATGCTTATGAAAAGATGCTTCGCTCCATTGAAGAATTTGCTGACTTTGGGAAGCTTTTCAAGTCATCCGCATCTTTGGAGCTTACAGAGGCAGAAACAGAGTATGCTGTCAATGTTGTCAAGCATATTTTTGATAGACACGTTGTCTTTCAATATAACTGCACGAATACAATTCCTGAGCAGCTACTAGAAAATGTTAATGTTATTGTGGATGCCTCGGAAGCAGAGGAATTCTCGGAAGTGGTATCCAAGCCACTCAGATCTCTTCCTTACAATTCACCCGGGCAAACCTTTGTGGCATTTGAGAAACCAGATGGAGTCGCTGCAGTTGGGAAGTTCTCAAATATGTTGAAGTTCATTGTCAAAGAGATTGATCCGTCTACTGGCGAGGCAGAGGATGATGGTGTTGAAGATGAATATCAGCTTGAGGACGTTGAGGTGGTCGCAGCAGATTACATGTTGAAAGTAGCAGTGTCTAACTTCAGGAATGCATGGGAAAGCATGGGTGAAGATGGTGAACGTGTAGATGAATATGGATTAGGTCCAAGGGGAAGCTTGGCTGAAGCTGTGCGTGCTGTCATAGACCTTCTAGGCATGCAACCTTGTGAGGGCACAGAAGTTGTCCCAAGCAATCTGCGGTCACACACATGTTTACTATCTGGTGTATTCATTGGAAATGTGAGAGTACTCGCCCGTCTCTCATTTGGTCTCGATGCTTCAAGGGAGGTTGCAATGAAGCTGGTCGTTAGATCCGACGATGAAACAGTCAATGATCTCATTCACGAGATTATCTCCAGCGGCTAA 2664 42.87 MAQPLVKKDDDYDDEEEYSPFLGIEKGTVLQEARVFNDPQLDTRKCSQVITKLLYLLNQGETFTKVEATEVFFGVTKLFQSRDIELRRMVYLMIKELSPSSDDVIIVTSSLMKDMNSKNDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAPLVQFHALGLLHQIRQNDRLAVNKLVSSLTRGTARSPLAQCLLVRYASQVASESAANSQTGDRPLYDFLDSCLRHKSEMVILEAARAIAELNGVTSREVTPAITVLQLFLNSPKPVLRFAAIRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVDAIRSLCLKFPLKYRSLMNFLCNILREEGGFEYKKVIVDSIVILIRDIPEAKENGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKASDPSKYIRYIYNRVHLENATVRACAVSTLAKFAVMVDSLKPRIYVLLRRCLFDSDDEVRDRATLYLKTLGADGSVLENEKDVQEILFGSLDLPLVNLETSLKNYEPSEEPFDLDSVPKEMKSLPLAEKKGSSKKSNGLGAPPITLASSVDAYEKMLRSIEEFADFGKLFKSSASLELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVNVIVDASEAEEFSEVVSKPLRSLPYNSPGQTFVAFEKPDGVAAVGKFSNMLKFIVKEIDPSTGEAEDDGVEDEYQLEDVEVVAADYMLKVAVSNFRNAWESMGEDGERVDEYGLGPRGSLAEAVRAVIDLLGMQPCEGTEVVPSNLRSHTCLLSGVFIGNVRVLARLSFGLDASREVAMKLVVRSDDETVNDLIHEIISSG 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5583232 5596364 + Lsi10G003580.1 Lsi10g00358 671915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00358 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Lsi10g00358 887 PANTHER COATOMER SUBUNIT GAMMA 1 887 - -
Lsi10g00358 887 Pfam Adaptin N terminal region 26 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lsi10g00358 887 Gene3D - 23 316 IPR011989 -
Lsi10g00358 887 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lsi10g00358 887 Gene3D Coatomer, gamma subunit, appendage domain 615 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lsi10g00358 887 PANTHER COATOMER SUBUNIT GAMMA 1 887 IPR017106 -
Lsi10g00358 887 Gene3D - 769 885 IPR012295 -
Lsi10g00358 887 PIRSF Gamma-COP 7 885 IPR017106 -
Lsi10g00358 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 883 IPR009028 GO:0006886|GO:0016192|GO:0030117
Lsi10g00358 887 SUPERFAMILY ARM repeat 24 594 IPR016024 -
Lsi10g00358 887 SUPERFAMILY Clathrin adaptor appendage domain 619 771 IPR013041 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00358 K17267 COPG; coatomer subunit gamma - csv:101213217 1665.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00358 Lsi11g01096 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00626 Lsi-Chr7:6701937 Lsi10g00358 Lsi-Chr10:5583232 8.60E-08 transposed
Lsi09g00238 Lsi-Chr9:2512831 Lsi10g00358 Lsi-Chr10:5583232 8.09E-16 transposed
Lsi11g01425 Lsi-Chr11:22813440 Lsi10g00358 Lsi-Chr10:5583232 2.06E-13 transposed
Lsi10g00358 Lsi-Chr10:5583232 Lsi11g01096 Lsi-Chr11:19098239 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g582 Blo02g00800 . . Bda08g00925 . Bpe12g00078 . . Cmo19g00674 . Cma02g00404 . Car02g00264 Car20g00739 Sed05g2322 Cpe04g00125 Cpe15g00534 Bhi05g01224 Tan02g0807 Cmetu01g1965 . Hepe02g0514 . . Cla02g00528 Cam02g0546 Cec02g0547 Cco02g0553 Clacu02g0547 Cmu02g0542 Cre02g0873 Cone12ag1147 Cone8ag1195 Cone3ag1158 . Lsi10g00358 . Chy11g00388 Cme01g01429 Blo04g00508 Blo13g00555 . Bda14g00549 Bpe15g00871 . . . Sed01g0309 Cmo02g00409 Cmo20g00865 . Cma19g00660 . Car19g00503 . Cpe05g01253 Bhi10g02020 Tan05g1319 Cmetu11g0171 . Hepe08g1023 . . . . . . . . . Lsi11g01096 Csa02g01249 Chy01g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001661 4 2 3 0 2 2 3 2 2 2 2 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 4 3 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00358 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.655538 0.0 0.326582 0.073927 0.0 0.0