Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00366 ATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCGCTCAATTTGGTGATATCGTTGAAGCCAAGATCGTCAACGATCGTGAAACCGGAAGGTCGAGGGGATTTGGATTCGTGACGTTTGCTGAGGAGGAGGCTATGAGGAGTGCTATTGAAGCAATGAACGGCCAGAATCTCGACGGTCGTAGTATTACCGTCAACGAGGCGCAGCAAAGAGGTGGAGGTGGCGGTGGTGGTTACAGCCGTGGTGGTGGTGGTGGAGGTGGATACGGTGGACGACGTGAAGGAGGAGGTGGTGGTGGATACAGCCGTGGAGGCGGTGGTTACGGAGGAGGTGGAGGTGGATACGGAGGAGGTGGTTATGGTGGTGGACGTGACCGTGGCTACGGCGGTGGTGGTGATGGTGGTTCCCGTTACTCCAGGGGAGGCGGCGGCGGTGGATCTGAAGGAGGATGGAGAAATTAG 510 56.27 MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGWRN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5657381 5660065 + Lsi10G003660.1 Lsi10g00366 671923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00366 169 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Lsi10g00366 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lsi10g00366 169 SMART rrm1_1 9 82 IPR000504 GO:0003723
Lsi10g00366 169 Gene3D - 2 106 IPR012677 -
Lsi10g00366 169 PANTHER GEO13361P1-RELATED 1 169 - -
Lsi10g00366 169 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 169 - -
Lsi10g00366 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Lsi10g00366 169 MobiDBLite consensus disorder prediction 83 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00366 - - K13195 cmax:111499534 160.999
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01255 Lsi-Chr4:19552123 Lsi10g00366 Lsi-Chr10:5657381 1.90E-15 dispersed
Lsi06g01412 Lsi-Chr6:24692045 Lsi10g00366 Lsi-Chr10:5657381 7.29E-17 dispersed
Lsi08g00690 Lsi-Chr8:15208974 Lsi10g00366 Lsi-Chr10:5657381 1.53E-20 dispersed
Lsi08g00692 Lsi-Chr8:15228473 Lsi10g00366 Lsi-Chr10:5657381 5.89E-12 dispersed
Lsi08g00902 Lsi-Chr8:17380734 Lsi10g00366 Lsi-Chr10:5657381 2.42E-14 dispersed
Lsi10g00366 Lsi-Chr10:5657381 Lsi03g00795 Lsi-Chr3:11693359 1.02E-34 dispersed
Lsi10g00366 Lsi-Chr10:5657381 Lsi02g00118 Lsi-Chr2:977867 5.94E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00366 Lsi_Chr10 FPKM 26.398949 22.170183 14.29715 20.389301 21.007322 16.105001 18.310877 13.210823 16.052574 15.971931