Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00372 ATGGCGAGACGAAATTTCTTCGGCATCGGCGGCCGAAAAAAAGTACTCACCACCAACTCTGTTTCCGGCCACCATTTTAAAGCCCCAATCATCGCCCCATTTCCCGTCTCTCCGATTCGATTCCACAATCCAAACATACACACAAAACCCCAAATTCCATCTCTCGATTTTGTTCGTCTTGTTTTCTTTATGATGGATACATTGGAGGAGGAGGAAGAATACAACTGGAGAGAAGTACGGCTTCCGTCGCTGATCCCTGTGGTGCCGGAGCCAGAGCTGGAGAGAGAGACGGCGGAGAGACGTCGTGGCCGAGACATCCTCATCGCCGTCGACCATGGACCCAACAGCAAACACGCTTTCGATTGGGCTCTAATCCATTTCTGCCGCCTCGCTGATACCATCCATCTAGTCCACGCCGTTTCAAATGTGAAGAATGAATTAGTTTATGAGTTCAGCCAAGGGCTGATGGAGAAGCTTGCAGTGGAGGCGTTTGAGGTGGCCATGGTTAGGACTGTGGCAAGGATTGTGCAGGGAGATGCAGGGAAGGTTATTTGTAAGGAAGCAGAGAAGTTGAAGCCTGCTGCTGTTATTATGGGCACCAGAGGAAGAAGCTTGATTCAAAGTGTTTTGCAAGGAAGTGTGAGTGAGCATGTCTTTCACAACTGCAAATCAGCACCGGTTATTATAGTTCCTGGGAAAGATTTAAAGGTTCAAACTTCAAAGCGTGAGTTTGGAATTCTGTTTGTCATTTGTGACAGAAGCTGGAGAAACATCTGTGATTTGAATGCCAACTGCTTGGTTGATGCCTGA 810 47.9 MARRNFFGIGGRKKVLTTNSVSGHHFKAPIIAPFPVSPIRFHNPNIHTKPQIPSLDFVRLVFFMMDTLEEEEEYNWREVRLPSLIPVVPEPELERETAERRRGRDILIAVDHGPNSKHAFDWALIHFCRLADTIHLVHAVSNVKNELVYEFSQGLMEKLAVEAFEVAMVRTVARIVQGDAGKVICKEAEKLKPAAVIMGTRGRSLIQSVLQGSVSEHVFHNCKSAPVIIVPGKDLKVQTSKREFGILFVICDRSWRNICDLNANCLVDA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5733628 5736477 - Lsi10G003720.1 Lsi10g00372 671929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00372 269 Pfam Universal stress protein family 104 231 IPR006016 -
Lsi10g00372 269 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 65 237 - -
Lsi10g00372 269 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 104 234 - -
Lsi10g00372 269 Gene3D - 77 231 - -
Lsi10g00372 269 CDD USP_Like 106 230 - -
Lsi10g00372 269 PRINTS Universal stress protein signature 103 121 IPR006015 -
Lsi10g00372 269 PRINTS Universal stress protein signature 190 202 IPR006015 -
Lsi10g00372 269 PRINTS Universal stress protein signature 208 230 IPR006015 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00372 - - - csv:101210790 333.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00372 Lsi-Chr10:5733628 Lsi11g00622 Lsi-Chr11:6616464 2.15E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g376 . Blo15g00701 . . Bpe07g00426 . . Bma12g00508 . . . Cma20g00846 . Car20g00732 . . . . . . . . . . . . . . . . . . . Cone3ag1166 Cone10ag0967 Lsi10g00372 . Chy11g00376 . . . . . . . . . Sed01g0301 . Cmo20g00856 . . . . Cpe16g00244 . Bhi10g02006 Tan05g1301 Cmetu11g1811 . Hepe08g1013 . . . . . . . . . . Csa02g01260 . Cme11g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010475 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00372 Lsi_Chr10 FPKM 11.354955 10.983378 11.280869 11.551641 8.137248 6.299107 7.73967 13.20645 12.067966 16.433758