Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00375 ATGGCTCCTACAGATATGACAAGTGCAAGGCTGATAAGAGTGGATCAAGCAGGAAATGGAGATTTTAAGAAGATTCAAGAAGCCATTGATTCTGTTCCATCTCATAACAATGAACTCGTTTTCATTTGGGTTAAGCCTGGAACTTACAGCAAGGCGTCGGACACCATAATCACATGGAACCAAGGAAATAGTTTACTTCAATCTCCGGTCGTCTCTGTCTTTGCCTCCGACTTCATCGGCCGTTTTCTAACCATCCAAAACACCTTCGGCACCACGGGCATTGCGGTGGCGCTAAGGGTCTCAGCCGACAGAGCCGCCTTCTACGGTTGCCGGATTATTTCCTTTCAAGATACACTTCTGGATGACGCCGGAAGACATTACTTCAATAATTGTTACATTGAAGGAGCCACCGATTTCATCTGTGGAAACGCCGCTTCTCTCTATGAGAGGTGCCATTTGCATTCGACGTCAGATAGAGGTGGTGCGATGACGGCGCAGCACCGGAACACGACGGAGGAGAACACTGGGTTCGTGTTCTTGGGGGGGAAAATTACAGGAAGTGGTTCCACTTTTCTTGGACGGCCATGGGGGAATTTCTCTAAGGTTGTGTTTGGCTACACTTATATGTCCAATGTTGTTGAACCACAGGGCTGGAATGATTGGGGAGATCAAAGCAAACAAAGAACGGTGTGGTATGGAGAATACAAATGCTATGGGCCAGGAGCAAACAGAACCAAAAGAGTGGCATGGTCACGCAACTTATCGACGGATGAGGCTGCAAAACTCTTCACCAAAGACATCATTGGCGGTCGAGCTTGGCTTCGACCTGCACCATCTCATTTCAATAGGGGCTAG 855 47.95 MAPTDMTSARLIRVDQAGNGDFKKIQEAIDSVPSHNNELVFIWVKPGTYSKASDTIITWNQGNSLLQSPVVSVFASDFIGRFLTIQNTFGTTGIAVALRVSADRAAFYGCRIISFQDTLLDDAGRHYFNNCYIEGATDFICGNAASLYERCHLHSTSDRGGAMTAQHRNTTEENTGFVFLGGKITGSGSTFLGRPWGNFSKVVFGYTYMSNVVEPQGWNDWGDQSKQRTVWYGEYKCYGPGANRTKRVAWSRNLSTDEAAKLFTKDIIGGRAWLRPAPSHFNRG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5763626 5768494 + Lsi10G003750.1 Lsi10g00375 671932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00375 284 PANTHER PECTINESTERASE 11-RELATED 6 276 - -
Lsi10g00375 284 SUPERFAMILY Pectin lyase-like 7 281 IPR011050 -
Lsi10g00375 284 Pfam Pectinesterase 61 265 IPR000070 GO:0030599|GO:0042545
Lsi10g00375 284 Gene3D - 6 284 IPR012334 -
Lsi10g00375 284 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00375 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215864 525.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00424 Lsi-Chr9:4495920 Lsi10g00375 Lsi-Chr10:5763626 3.17E-71 dispersed
Lsi10g00375 Lsi-Chr10:5763626 Lsi03g01970 Lsi-Chr3:31110745 1.47E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g375 . . . . . . . . . . Cma02g00394 . Car02g00256 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00375 . Chy11g00374 . . . . . . . . . Sed05g3617 . . . . . . . Cpe05g01263 Bhi10g02000 Tan05g1298 Cmetu11g1012 . Hepe08g1012 . . . . . . . . . . Csa02g01264 . Cme11g00120
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00375 Lsi_Chr10 FPKM 0.031054 0.091484 0.0 0.015926 0.047504 0.119162 0.0 0.158471 0.332822 0.155025