Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00376 ATGGTGGAGAAAAGCAAGATTCTGATCATTGGAGCAACAGGTTATCTAGGATTCCATTTGGCTCAAGCCAGCTGCAATTCTTCTCACCCTACATTTGCTCTCATCAGAGATTCTACTTTCTCTTCACCTCACAAACTAGACAAGCTCCAAGCTCTCGCCGATACCGGAGTTAAATTCCTCAAGGGTTCTCTGGACGACGAAGCTAGCCTTGTGGAAGCTGTTAATCAAGTGGATGTGGTTATTTGTGCTGTTTCCTCTAAACAGGTGTCAGAACAGAAGCCTCTGATTCGAGTCATCAAACAAACTGGATCCATTAAGAGGTTTATTCCATCAGAATTTGGACTTGATCCTGATAAGGTTCAAATCTTAAATATGGATTACAACTTCTATTCCCGCAAAGCTGAAATTCGTCGGCTAGTTGAAGCTGAAGGCATTCCATATACCATAGTTTCTTGCAACTTTTTTACAAGTTATTTACTTCCTTCCCTTGTTCAACCAGGCATGAAAAGCCCTCCAAGGGATAAGGTGACAATATTTGGTGATGGAAATACCAGAGGTGTATTTGTGAAGGTTAATGATGTTGCTGCCTTAACAATTAGTGCAGTGGATGATCCACGCACATTGAACAAGGTAGTTTATCTAAGGCCGGAAGGAAATGTTTATTCCTTGAATGAACTTGTTGAGATTTGGGAGGGTAAAATTGGGAAGAAGCTTGAGAAGAATTATGTATCAGAAGAGGAGCTGCTAAAGAAAATTGAAGAGACTCCTTACCCTGACAATATGGAGTTCATTTTCATATATTCTGCATTTATAAAAGGAGATCAAACATACTTCGATATTGAGGCATCAAATGGCGTTGATGGTTCAAAATTGTATCCACAACACAAGCATACTACGATTAGTGAGTTTCTGGACACCCTATTGTAA 927 39.91 MVEKSKILIIGATGYLGFHLAQASCNSSHPTFALIRDSTFSSPHKLDKLQALADTGVKFLKGSLDDEASLVEAVNQVDVVICAVSSKQVSEQKPLIRVIKQTGSIKRFIPSEFGLDPDKVQILNMDYNFYSRKAEIRRLVEAEGIPYTIVSCNFFTSYLLPSLVQPGMKSPPRDKVTIFGDGNTRGVFVKVNDVAALTISAVDDPRTLNKVVYLRPEGNVYSLNELVEIWEGKIGKKLEKNYVSEEELLKKIEETPYPDNMEFIFIYSAFIKGDQTYFDIEASNGVDGSKLYPQHKHTTISEFLDTLL 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5772225 5775716 + Lsi10G003760.1 Lsi10g00376 671933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00376 308 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 3 306 - -
Lsi10g00376 308 Gene3D - 154 303 - -
Lsi10g00376 308 Gene3D - 6 294 - -
Lsi10g00376 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 278 IPR036291 -
Lsi10g00376 308 Pfam NmrA-like family 7 238 IPR008030 -
Lsi10g00376 308 Coils Coil 235 255 - -
Lsi10g00376 308 CDD PCBER_SDR_a 6 284 IPR045312 GO:0016491
Lsi10g00376 308 PANTHER PINORESINOL REDUCTASE-RELATED 3 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00376 - - - csv:101210047 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00376 Lsi-Chr10:5772225 Lsi10g00378 Lsi-Chr10:5784438 2.56E-108 dispersed
Lsi10g00376 Lsi-Chr10:5772225 Lsi10g00377 Lsi-Chr10:5779206 8.22E-97 tandem
Lsi10g00376 Lsi-Chr10:5772225 Lsi11g01113 Lsi-Chr11:19495562 4.70E-72 wgd
Lsi10g00376 Lsi-Chr10:5772225 Lsi08g01387 Lsi-Chr8:22149341 4.78E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g371 . . . . . . Bma05g00447 . . . . . . . Sed11g1039 . . Bhi05g01241 Tan02g1978 Cmetu01g0347 . . . . . . . . . . . . . . . Lsi10g00376 . . . . . . . . . . . . . . . . . . . Cpe05g01264 Bhi10g01998 Tan05g1296 . . . . . . . . . . . . . Csa02g01265 . Cme11g00121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00376 Lsi_Chr10 FPKM 1.613091 2.690179 2.005858 2.226462 2.47799 2.335879 2.121204 4.117713 3.546471 3.705481