Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00377 ATCAAAGCAATATTTCTAAACAACGACAAAGAAACTCTCCCAGCGTCTTCTTCTTTCTTTCTGCAGCTCGCCGGTAGTCCTCCGATTAGCCATTTCTCCGCCGGGAACCTTACTCCAATGGCTCAGAATCTCAAGGTTCTTATCATCGGAGGAACTGGCTACATCGGAAAATTCATAGTGCAAGCCAGCGCCAAAGCCGGTCATCCTACCTATGCATTGATCCGCAGGTCTTCGCTCGAAAGCCCCGCCAAGTATCGAATCATCAATCATTTCAAAAGCTTAGGGGTCAATTTTCTCTTCGGCGATCTCTTTGACAATGAGAGTCTGGTTAAGGCGATTAAGCAGGTTGATGTAGTGATATCCACCCTCGGTGGTCATATGGTTCCCCATCAACATAAGATCCTATCTGCTATCAAACAAGCTGGCAATGTAAAGAGATTCTTTCCTTCCGAGTTCGGCAACGACGCGGATCATATCGATGCAGTGGAGCCAGCAAAATCAATGTATGCTGCAAAGGCTGAATTTCGTAGGGCTGTGGAGGCTGAGGGAATCCCACATACATTTGTGGTATGCAATTTCTTCGATGGTTACTTTCTTAGCAACTTGTCTCAGCCAGATGCAACCGGAGGTATAGATTTTGTTTCAACAGCCATTCACCCAATTCATTCTGTGTCTGTTTTGTTTCATGAAGTGATTTACAACAAGGAAGAAGACGTTGGGACGTACACAATCCGAGCAATAGATGATCCAAGGACCCTCAACAAGATCATGTACCTTAGACCCCCAGCCAACATCTACTCAACCAATGATCTCATCTCTCTGTGGGAGAGAAAAATTGGCAAGAGTCTTAAAAGGATCTACGTCCCAGAGGAGGAAGTGTTGAAGAAAATCAAAGAGACTTCATATCCATTTAATATAGAATTAGCACTCTGTCACACTGCTCAGGTGAAGGGATCTCAAACTAATTTTGATATTGAGCCATCTTTTGGAGTGGAAGCTTCAGCATTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTTGACCAGTTTGTCTAA 1062 44.07 IKAIFLNNDKETLPASSSFFLQLAGSPPISHFSAGNLTPMAQNLKVLIIGGTGYIGKFIVQASAKAGHPTYALIRRSSLESPAKYRIINHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKILSAIKQAGNVKRFFPSEFGNDADHIDAVEPAKSMYAAKAEFRRAVEAEGIPHTFVVCNFFDGYFLSNLSQPDATGGIDFVSTAIHPIHSVSVLFHEVIYNKEEDVGTYTIRAIDDPRTLNKIMYLRPPANIYSTNDLISLWERKIGKSLKRIYVPEEEVLKKIKETSYPFNIELALCHTAQVKGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5779206 5781810 + Lsi10G003770.1 Lsi10g00377 671934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00377 353 Gene3D - 193 349 - -
Lsi10g00377 353 CDD PCBER_SDR_a 45 348 IPR045312 GO:0016491
Lsi10g00377 353 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 40 353 - -
Lsi10g00377 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 315 IPR036291 -
Lsi10g00377 353 Gene3D - 45 339 - -
Lsi10g00377 353 Pfam NmrA-like family 46 316 IPR008030 -
Lsi10g00377 353 PANTHER PINORESINOL REDUCTASE-RELATED 40 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00377 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101209800 552.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00377 Lsi-Chr10:5779206 Lsi11g01113 Lsi-Chr11:19495562 8.32E-88 dispersed
Lsi10g00376 Lsi-Chr10:5772225 Lsi10g00377 Lsi-Chr10:5779206 8.22E-97 tandem
Lsi10g00377 Lsi-Chr10:5779206 Lsi10g00378 Lsi-Chr10:5784438 2.37E-165 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g369 . . . . . . . . . . . Cma20g00845 . . Sed04g3918 . . Bhi05g01243 Tan02g0785 Cmetu01g0437 . Hepe02g0491 . . . . . . . . . . . . . Lsi10g00377 . . . . . . . . . . . Sed05g3616 . . . . . . . . Bhi10g01997 Tan05g1295 Cmetu11g0943 . Hepe08g1010 . . . . . . . . . . Csa02g01266 . Cme11g00122
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00377 Lsi_Chr10 FPKM 204.673996 194.44487 138.233032 128.2444 122.404045 116.967125 114.42971 49.503372 64.029709 64.2668