Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00378 CACCGGTACAGCTCCGATCAAGCATTGTTCGCCGGAAACCATAATCCGATGACTCAGAAGCTCAAGGTTCTCATCATCGCAACTGGTTACATCGGAATTTTTTTTGTAGAAGCGAGCGTCAAAGCAGGTCACCGTCACAGCTCCGATCAGGTTTTGTTTGCCGGAAACCTTAATTTGATGGCTCAGAAGCTCAAAGTTCTCATCATCGGAGGTACTGGCTACATCGGAAAATTCCTAGTAGAAGCCAGCGCAAAAGCAGGTCATCCAACTTATATATTGGTCCGCGAATCTACCCTCGCTGCCTCCACTAAGTCTTCGATCATCGATAATTTCAGGAGCTTGGGTGTCAATTTCGTCTTCGGCGATATCTTCGACAATGAGAGTCTGGTTAGGGCAATACAGCAGGTTGATGTGGTGATATCCACCGTTGGTCGTTCTCTGTTATCCGATCAAGATAAGATCATATCTGCTATCAAACAAGCTGGTAATGTTAAGAGATTTTTTCCCTCTGAGTTTGGCAACGATGTGGATCGTGTTCATGCCGTGGAGCCAGCAAAATCGATGTTTGCCCGTAAGGTTGAAATTCGTAGGGCTGTTGAGGCAGAGGGAATCCCCCATACATTTGTTGTTAGCAATTTCTTCGATGGTTACTATCTTCGCAACTTTTCTCAGCCAGGAGCCAGCAACCCACCTAGAGACAAAATCAAAATCTTAGGGGATGGAAGTCTCAAAGTGATTTACAACAAGGAAGAAGACATTGGAACATACACCATCCGAGCCATAGATGATCCAAGAACTCTCAACAAGATCTTGTACATTCGACCTCCTGCTAACATCTTCTCGACTAATGAGCTAGTCTCACTGTGGGAGAGAAAAATTGGCAGGACTCTTGAAAGGACCTACGTCCCAGAGGAGGAGCTTGTGAAGAACATCCAAGAGACTCCATTTCCACTTAATACAGCATTAGCAATTAGTCACAGTGCTTTTGTGAAGGGAGATCATACCAACTTTGATATTGAACCATCACTTGGAGTGGAAGCTTCAGAACTGTATCCTGATGTTCAATACACAACTGTAGAAGATTACCTCAACCAGTTTGTTTAG 1104 44.47 HRYSSDQALFAGNHNPMTQKLKVLIIATGYIGIFFVEASVKAGHRHSSDQVLFAGNLNLMAQKLKVLIIGGTGYIGKFLVEASAKAGHPTYILVRESTLAASTKSSIIDNFRSLGVNFVFGDIFDNESLVRAIQQVDVVISTVGRSLLSDQDKIISAIKQAGNVKRFFPSEFGNDVDRVHAVEPAKSMFARKVEIRRAVEAEGIPHTFVVSNFFDGYYLRNFSQPGASNPPRDKIKILGDGSLKVIYNKEEDIGTYTIRAIDDPRTLNKILYIRPPANIFSTNELVSLWERKIGRTLERTYVPEEELVKNIQETPFPLNTALAISHSAFVKGDHTNFDIEPSLGVEASELYPDVQYTTVEDYLNQFV 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5784438 5790229 + Lsi10G003780.1 Lsi10g00378 671935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00378 367 Gene3D - 65 353 - -
Lsi10g00378 367 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 60 367 - -
Lsi10g00378 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 65 336 IPR036291 -
Lsi10g00378 367 PANTHER PINORESINOL REDUCTASE-RELATED 60 367 - -
Lsi10g00378 367 CDD PCBER_SDR_a 65 362 IPR045312 GO:0016491
Lsi10g00378 367 Pfam NmrA-like family 66 311 IPR008030 -
Lsi10g00378 367 Gene3D - 213 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00378 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101210299 550.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00876 Lsi-Chr5:15000019 Lsi10g00378 Lsi-Chr10:5784438 7.34E-168 dispersed
Lsi08g01387 Lsi-Chr8:22149341 Lsi10g00378 Lsi-Chr10:5784438 2.27E-148 dispersed
Lsi10g00376 Lsi-Chr10:5772225 Lsi10g00378 Lsi-Chr10:5784438 2.56E-108 dispersed
Lsi10g00378 Lsi-Chr10:5784438 Lsi11g01113 Lsi-Chr11:19495562 2.02E-101 dispersed
Lsi10g00377 Lsi-Chr10:5779206 Lsi10g00378 Lsi-Chr10:5784438 2.37E-165 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g367 . . . . . . . . . . Cma02g00392 Cma20g00844 Car02g00255 Car20g00731 . . . Bhi05g01245 Tan02g0784 Cmetu01g1772 . . . . . . . . . . . . . . . Lsi10g00378 . . . . . . . . . . . Sed01g0298 Cmo02g00399 Cmo20g00855 . . . . . . Bhi10g01996 Tan05g1294 Cmetu11g1946 . . . . . . . . . . . . Csa02g01267 . Cme11g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00378 Lsi_Chr10 FPKM 14.086081 15.903315 23.532328 23.381853 14.008194 16.360945 17.339691 14.638717 12.158455 13.993948