Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00379 ATGGGCAAAGTCAAGGGGAAGCATCGTTTGGACAAGTACTATCGCCTTGCCAAAGAGCATGGCTATCGCTCTCGTGCCTCATGGAAACTCGCCCAGCTCGATTCCAAATACAACTTCCTCCGTTCCTCCCATGCCGTCCTCGATCTCTGCGCCGCTCCCGGTGGTTGGATGCAAGTCGCCGTCGAGCGTGTTCCCGTTGGTAGTCTTGTCGTCGGTGTCGATTTGGTTCCCATTGCGCCCGTCCGCGGTGCCGTTGCTTTCGAGCAGGATATCACCAAGCCGGAGTGTAAGGCCAGGCTCAAGAAGATTATGAGCGACAAAGGGTGTGCTGCTTTCGATTTAGTCCTGCACGATGGTTCGCCCAATGTTGGTGGGGCTTGGGCGCAGGAGGCTATGGCCCAGAATTCGTTGGTTATAGATTCTGTCAAATTAGCGACTCAGTTGTTGGCTCCGAAGGGTACATTTGTTACCAAGGTTTTCAGGTCACAAGATTACAGTTCTGTCCTATATTGTATCAAGCAGTTATTTGAAAAGGTTGAGGTTGACAAACCAGCAGCAAGTCGATCCGCATCTGCAGAAATATATATTTTGGGTCTTAGGTATAAGGCTCCTGCAAAGATTGATCCTCGTCTTCTTGATGTGAAACACCTATTTCAAGGATGTGTAGAACCCCAACGGAAGGTTTTGGATGTACTTAGAGGAACAAAACAAAAGAGACATCGTGATGGATATGAAGATGGAGATATGACTCTTCGGAAAGTGTCTTCTGCATCTGATTTCATCTGGTCAGATTCTCCTCTTGAGATCTTAGGAACTGTGACTTGTATAACTTTTGATGATCCTGCTTGTTTGCCGATTAAGGATCATGATTTAACAACTGAAGAGGTTAAGGCACTTTGTGATGATTTGCGTGTCTTGGGAAAGCAAGATTTTAAGCATCTGCTGAAGTGGCGATTGCACATAAGGAAGGCCTTATCTCCCAATCAGAAGGCTACATCCACTCCGGTTAAAGATGCTGAAAATGAGGTAAAGCAGGATGAAGATGATAAATTACTAAATGAGATGGAGGAGCTGACATATGCTATGGAGCGGAAGAAGAGAAGGGCAAAGAAGCTACTTGCAAAAAGGAAAGCTAAGGACAAAGCTAGGAAAGCGATGGGGAATCAACTAGACGTCATGGAAGAGGGTTATATTGATCATGAGTTATTCTCTCTTTCCAACATCAAGGTATGCTTTCACTTATATGGTAAGAATGATTTAAGAGTTGTTGATACAACTGTCTATGATGATGACAATGATGAGTTGGGAGAGCATGAAAATGATGTAACCAACGAGGAAGACCATGGGTCTTCAGCTAGTGATATTGACTCTGATGAAGAGCGCAGAAGGTATGATGAACATATGGAAGAATTGTTGGATCAGGCTTATGAAAGCTTTGTTTCCAGAAAGGAAGGAACTGCAAAGCAGCGGAAACGTGTAAGAAAAGCTTATTCTGATGCTGCTGAGCTGCTTGAGGAGTCTGGCTGTCTGCAGGAGGATGAGGATGGAGGCGATGGTTTTCAATCTGATTATGACTCCGATGAAAATATTGTAGATGCGGATAAAAATCCACTGATGGTATCTCTTGATGACGGTGCGAAGGCAACTCAAGAGGAGATCGCAAACAAGTGGTTCAGTCAGGATATTTTTGCTGAAGCAGCAGAGGATGGAGACTTGAAAGGGTTGGATAGCGAAGATGATATGCAGGTTGATGGACCAAAGGAAAGTACTGCTGTCTCCAAAGAAGTCAAGTCAAATATTTCAAAGAATGCAAGAGAAAAGTCTAAAATTTCAACCAATACAGGAGAATCTAACAAAGCAGACGATGGATTTGAGGTTGTCCCTGCCCCAGCTACAGATTCAAGTGACAGTTCATCCTCTGAAGAATCTGATGATGAAGATCCTGACACAAAGGCTGAGATATTAGCATGTGCAAAGAAGATGCTGAGGAAAAAGCAAAGACAGCAGATTCTTGATGATTCTTACAACAAATACATGTTTGATGACACAGGCTTGCCCAAGTGGTTTTTGGATGAGGAGCGAAGACACCGTCAACCGATAAAGCCTGTAACCAAAGAGGAGGTTGCCGCAATAAGAGCACAGTTCAAAGAAATCGATGCTCGCCCTGCTAAAAAGGTAGCTGAAGCTAAAGCACGAAAAAAGCGAGTTGCAATGAAGAAACTTGAGAAAGTTCGCAAGAAGGCAAATGTCATCTCAGACCAGGCTGATATATCAGATCGATCAAAGAGGAAGATGATTGATCAACTTTACAAAAAAGCTGCACCCCAAAGGCCCAAAAAGGAACTTGTGGTTGCAAAGAAAGGAGTTCAAGTCAGGGTTGGAAAGGGTAAAGTCTTGGTCGATCGACGTATGAAGAAGGATGCGAGGAAGCATGGAATGAGCAAGCAGGGTAAAGGACTCAAAGGCTCGAAGAAGGGAAAGAACTCAAAGGCTCCAAGAGCTAAGGGGGGATCTGCTAAGGACTCAAAGACTCCAAGAGGTAAGGCTGGATTCGCTAAGGACTCAAAGGCTCCAAGAGGTAAGGCCGGATTCGCTAAGGCTACCGGGAAGAAGGGAAGAAAGGGAAACAAGTGA 2634 44.72 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLAQLDSKYNFLRSSHAVLDLCAAPGGWMQVAVERVPVGSLVVGVDLVPIAPVRGAVAFEQDITKPECKARLKKIMSDKGCAAFDLVLHDGSPNVGGAWAQEAMAQNSLVIDSVKLATQLLAPKGTFVTKVFRSQDYSSVLYCIKQLFEKVEVDKPAASRSASAEIYILGLRYKAPAKIDPRLLDVKHLFQGCVEPQRKVLDVLRGTKQKRHRDGYEDGDMTLRKVSSASDFIWSDSPLEILGTVTCITFDDPACLPIKDHDLTTEEVKALCDDLRVLGKQDFKHLLKWRLHIRKALSPNQKATSTPVKDAENEVKQDEDDKLLNEMEELTYAMERKKRRAKKLLAKRKAKDKARKAMGNQLDVMEEGYIDHELFSLSNIKVCFHLYGKNDLRVVDTTVYDDDNDELGEHENDVTNEEDHGSSASDIDSDEERRRYDEHMEELLDQAYESFVSRKEGTAKQRKRVRKAYSDAAELLEESGCLQEDEDGGDGFQSDYDSDENIVDADKNPLMVSLDDGAKATQEEIANKWFSQDIFAEAAEDGDLKGLDSEDDMQVDGPKESTAVSKEVKSNISKNAREKSKISTNTGESNKADDGFEVVPAPATDSSDSSSSEESDDEDPDTKAEILACAKKMLRKKQRQQILDDSYNKYMFDDTGLPKWFLDEERRHRQPIKPVTKEEVAAIRAQFKEIDARPAKKVAEAKARKKRVAMKKLEKVRKKANVISDQADISDRSKRKMIDQLYKKAAPQRPKKELVVAKKGVQVRVGKGKVLVDRRMKKDARKHGMSKQGKGLKGSKKGKNSKAPRAKGGSAKDSKTPRGKAGFAKDSKAPRGKAGFAKATGKKGRKGNK 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5791799 5798326 - Lsi10G003790.1 Lsi10g00379 671936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00379 877 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Lsi10g00379 877 MobiDBLite consensus disorder prediction 506 527 - -
Lsi10g00379 877 Coils Coil 355 375 - -
Lsi10g00379 877 MobiDBLite consensus disorder prediction 506 532 - -
Lsi10g00379 877 MobiDBLite consensus disorder prediction 431 463 - -
Lsi10g00379 877 Pfam Spb1 C-terminal domain 618 813 IPR012920 GO:0005634|GO:0006364|GO:0008168
Lsi10g00379 877 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 818 IPR028589 GO:0008649|GO:0031167
Lsi10g00379 877 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Lsi10g00379 877 Coils Coil 724 744 - -
Lsi10g00379 877 MobiDBLite consensus disorder prediction 605 619 - -
Lsi10g00379 877 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 820 - -
Lsi10g00379 877 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
Lsi10g00379 877 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Lsi10g00379 877 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 820 - -
Lsi10g00379 877 MobiDBLite consensus disorder prediction 793 877 - -
Lsi10g00379 877 MobiDBLite consensus disorder prediction 834 855 - -
Lsi10g00379 877 MobiDBLite consensus disorder prediction 568 652 - -
Lsi10g00379 877 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Lsi10g00379 877 MobiDBLite consensus disorder prediction 808 831 - -
Lsi10g00379 877 MobiDBLite consensus disorder prediction 441 463 - -
Lsi10g00379 877 MobiDBLite consensus disorder prediction 568 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00379 K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] - csv:101209556 1424.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01624 Lsi-Chr2:22138780 Lsi10g00379 Lsi-Chr10:5791799 1.03E-15 dispersed
Lsi10g00379 Lsi-Chr10:5791799 Lsi03g02184 Lsi-Chr3:32912881 1.61E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00379 Lsi_Chr10 FPKM 15.707379 16.295715 21.670364 22.738008 17.190464 15.68138 15.632465 15.085351 15.112107 17.585686