Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00382 ATGGCTGAATCAAATCAAACGCAATGCACCGCTGCCGAGATGAAGATCGATTCCGCCACCGCTTTACAACAGTATCTTGATCGCATCCCTGTCAGCTCCATCTCCGGCATCAAATCCGCCCTCGTTTTGGAAATCAAAACTGGGGACTCTGTTAAGGATGCAATACGAGTTATGTTCCAGAAGAATGTGGCTTGTGCTCTCATTGCCGATGTCTCCAGCGACGGTTTCCCTGATCGGTTTATTGGCTTTGTTCATCTCTCAAGCTTGCTTCTATGGTGTATTCAGGAGATTCAAAAGTTGGAGAATGAAATCAAGTGCATTGAGTTTGAGGAGACTAAAGAGACCGTTTGTGGGATTCTGGGGTTTCTTGAACAGAATCCACACATTGGTCAAACCAAGGTGGGTCAGTTGGGCAAGACATTCTTGTGGGATCCTTATTTTCCTGTTGGGATGAGGGATACGCTTTTCCATGTTCTGCTAATGCTTTCAAAGCATCGGTTACGAGCTGTTCCTGTAGTTGAGCTTTCCAATTCTAACGTCATTGGTTTCATTACACAGGGTGGAGGGGGGTTGAGGAAGCAAAAGGCAGATCATAAGATTCAGGCAACTGAGAATGCAGTAATTCATTTGCTTCTGGAATCAAGTGGATTGGAGTGGTTCGACAGCGTAGCGGACAAAGTTATATCAGACTTTCGGTTTGGTAATGAAGAGCATGTTCTCCATGTCTATGGTGACCAAAACATTATAGAAGCTTTTCATATACTATGGGAGAAACAAATTGATGCAGTTGCTGTAACAGATAGAGGAAGTAAGAGGCTTATTGGTTGTTTGAGGAACAGTGATGCATATCTTCTCTTGGAGAATGAAGATTTATTTCAGAACAGAAAAAGGCTAACGGTGAAGGAGTTCATTCATATGGAACCGAATAAAGCACAAGCAGACGCTGACCTGACAATCAATGGGAGCCAGGGGGCACTCACCTTGTCCTGTGCGCGTCCTCTAATTAGCAGCAAACTTCCAAATATGCACACCCCAGTGACTAACAAGAGAGATGACACACTGAAGCAAGTGATGAAAACTATGGTAGAGACCAATAGCAGTTTCAGCTTTCTCGTCAATAATTTGCAGCAAGCAACAGGAATACTCACTTTGCGAGACATGATAACTCAGTTTGCTCCTCCCTGTATGAATTCAACCATTCAAGGAGGTGGTTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTTAGAAATGGTACCATAATTTGTAACAAAACATTTTAG 1287 43.36 MAESNQTQCTAAEMKIDSATALQQYLDRIPVSSISGIKSALVLEIKTGDSVKDAIRVMFQKNVACALIADVSSDGFPDRFIGFVHLSSLLLWCIQEIQKLENEIKCIEFEETKETVCGILGFLEQNPHIGQTKVGQLGKTFLWDPYFPVGMRDTLFHVLLMLSKHRLRAVPVVELSNSNVIGFITQGGGGLRKQKADHKIQATENAVIHLLLESSGLEWFDSVADKVISDFRFGNEEHVLHVYGDQNIIEAFHILWEKQIDAVAVTDRGSKRLIGCLRNSDAYLLLENEDLFQNRKRLTVKEFIHMEPNKAQADADLTINGSQGALTLSCARPLISSKLPNMHTPVTNKRDDTLKQVMKTMVETNSSFSFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGGFFESALEQTGCQVRNGTIICNKTF 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5833990 5835985 - Lsi10G003820.1 Lsi10g00382 671939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00382 428 PANTHER OS01G0633400 PROTEIN 10 186 - -
Lsi10g00382 428 PANTHER OS01G0633400 PROTEIN 202 426 - -
Lsi10g00382 428 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 10 186 - -
Lsi10g00382 428 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 202 426 - -
Lsi10g00382 428 SUPERFAMILY CBS-domain pair 26 187 IPR046342 -
Lsi10g00382 428 Gene3D - 222 392 IPR046342 -
Lsi10g00382 428 CDD CBS_pair_SF 144 281 - -
Lsi10g00382 428 ProSiteProfiles CBS domain profile. 341 399 IPR000644 -
Lsi10g00382 428 SUPERFAMILY CBS-domain pair 224 389 IPR046342 -
Lsi10g00382 428 Gene3D - 3 188 IPR046342 -
Lsi10g00382 428 CDD CBS_pair_SF 237 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00382 - - - csv:101215388 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01638 Lsi-Chr6:26679724 Lsi10g00382 Lsi-Chr10:5833990 7.91E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g360 . . . . . . . . . . Cma02g00389 . Car02g00252 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00382 . Chy11g00369 . . . . . . . . . . Cmo02g00396 . . . . . . Cpe05g01268 . . . . . . . . . . . . . . . Csa02g01274 . Cme11g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013891 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00382 Lsi_Chr10 FPKM 1.76347 2.498184 0.548603 0.439718 1.673176 1.773144 2.095858 0.927804 1.060171 0.933124