Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00386 GTTCTACCGCACTTCCGTGGAAGTTGGGTGTGCGGGGGAAAATCATTGAAGTCACCGCTATATAGGTTTGTTCAAGTTTTTAGTTCTAATATGGCTGGTGATCCTTTGACAAGCTCTAATGGCAATGCTAATGTCAATGCACCACCTGATCCGCGGAGGACTTATCAAGTTGTTGTAGCTGCTACTGAAAATATGGGCATTGGTAAGGATGGGAAACTACCATGGAGGTTGCCTTCTGATCTCAAATTCTTTAAAAACATAACCACAACAACATCAGATCATGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTATTTCTGCTGAGCATCGGCCACTACCTGGTCGTCTGAATGTTGTTCTAACTCGCTCTGGAAGTTTTGACATTGCCACTGTTGAAAATGTTATAATATGTGGTAGTATAACGTCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGTGGTGGCGAGATATTAAGGGAAGCTTTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATTGAAACAAATGTTGAATGTGACACCTTCATGCCAGCTATTGATAAATCTATGTTTCAGCCATGGTACTCATCCTTTCCTGTGGTGGAAAATAACTTGCGACATTCGTTCACTAGTTATGTTCGTGTGAGGAGCTCAACTGACCCCCCCATTGATCAGAACAATGGTTTGGTCTCTCATAACAGGCCTGATTTTTCTAACTATGAGGCTAAGAAGTTCTCTTTCCTACCTAAGAAGATTTTTGAGAGGCATGAGGAGTACTTGTACCTAAAACTTGTTCAAGAAATCATCTCAGATGGTATTCCTAAGGATGATAGAACAGGAACAGGTACTTTGTCAAGATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTTCCACTGCTTACAACTAAGGCATGTGCCGGTTTCCTAAAGTATTTTGGCGAGGGGTTGTTGAAGAACTTCTTTGGTTTATCAGTGGTTCAACCAATGCAAAGTATTGGTTTAAGAGAAAGGGAGGAAGGCGACTTGGGACCTGTATATGGGTTCCAGTGGCGACACTTTGGTGCTAGGTATACGGACATGCATGCTAACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGCCACATGTTTGCTCAGTTTTACGTTGCGAATGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATATGCTCTTCTGACTTGCATGATTGCTCATGTTTGTGGTTTTGCTCGAGGCGACTTCATACACGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAGCAGCTTCAGAAACTCCCCAAACCGTTCCCCATTTTGAAGATAAATCCCGAGAAGAAGGATATCGATTCTTTCGTGGCAGATGATTTTGAACTAACAGGTTATGACCCTCATCAGAAGATAGCAATGAAAATGGCACCTCTGCTGCCGCGCTATGAACGCCTCCACCGTCTGCCGGAACTCCTCGTTGCTCATTCCATCTTCCGGATACGAGCTATTTCTTGTGTCTTCCCTCGATTCGACGATTTTCTTGCATTTCTCCGTCTCCGATCGCCGCAGTTCACGATCCGGATTCTCTCGCTATATCGAGGCGTCGCTGCGGCTGTCATCGATCTGCTTGATTCGATACTTGATCTCAGCGCGTCGAGTTTTCTGATTCTTCTCGCTGTTTTGGATGAACTCTTCGTAAAGATCGGCAACCGAATTCTTCTTGCTCGGATCTTTAGCAGAGAATTGTCCAGATTTAGCGAAAAGAGTGATGACTATAGCGTTTCCGATCAGAAACACGAAGCGAGGACTGATCAATGTCACTGA 2022 43.62 VLPHFRGSWVCGGKSLKSPLYRFVQVFSSNMAGDPLTSSNGNANVNAPPDPRRTYQVVVAATENMGIGKDGKLPWRLPSDLKFFKNITTTTSDHGKRNAVLMGRKTWESISAEHRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIETNVECDTFMPAIDKSMFQPWYSSFPVVENNLRHSFTSYVRVRSSTDPPIDQNNGLVSHNRPDFSNYEAKKFSFLPKKIFERHEEYLYLKLVQEIISDGIPKDDRTGTGTLSRFGCQMRYNLRKTFPLLTTKACAGFLKYFGEGLLKNFFGLSVVQPMQSIGLREREEGDLGPVYGFQWRHFGARYTDMHANYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGFARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVADDFELTGYDPHQKIAMKMAPLLPRYERLHRLPELLVAHSIFRIRAISCVFPRFDDFLAFLRLRSPQFTIRILSLYRGVAAAVIDLLDSILDLSASSFLILLAVLDELFVKIGNRILLARIFSRELSRFSEKSDDYSVSDQKHEARTDQCH 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5886872 5903751 - Lsi10G003870.1 Lsi10g00386 671943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00386 673 CDD DHFR 58 230 IPR001796 GO:0004146|GO:0046654
Lsi10g00386 673 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 66 88 IPR017925 GO:0004146
Lsi10g00386 673 PANTHER THYMIDYLATE SYNTHASE 1 31 542 IPR045097 GO:0016741
Lsi10g00386 673 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 266 542 IPR036926 -
Lsi10g00386 673 Hamap Thymidylate synthase [thyA]. 275 543 IPR000398 GO:0004799|GO:0006231
Lsi10g00386 673 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 54 231 IPR001796 GO:0004146|GO:0046654
Lsi10g00386 673 TIGRFAM thym_sym: thymidylate synthase 356 541 IPR000398 GO:0004799|GO:0006231
Lsi10g00386 673 PRINTS Thymidylate synthase family signature 394 413 IPR000398 GO:0004799|GO:0006231
Lsi10g00386 673 PRINTS Thymidylate synthase family signature 420 435 IPR000398 GO:0004799|GO:0006231
Lsi10g00386 673 PRINTS Thymidylate synthase family signature 476 493 IPR000398 GO:0004799|GO:0006231
Lsi10g00386 673 PRINTS Thymidylate synthase family signature 438 464 IPR000398 GO:0004799|GO:0006231
Lsi10g00386 673 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 251 542 IPR036926 -
Lsi10g00386 673 SUPERFAMILY Dihydrofolate reductase-like 52 231 IPR024072 -
Lsi10g00386 673 ProSitePatterns Thymidylate synthase active site. 405 433 IPR020940 GO:0004799|GO:0006231
Lsi10g00386 673 Gene3D Dihydrofolate Reductase, subunit A 38 232 IPR024072 -
Lsi10g00386 673 CDD TS_Pyrimidine_HMase 278 496 IPR023451 -
Lsi10g00386 673 Pfam Thymidylate synthase 278 542 IPR023451 -
Lsi10g00386 673 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 31 542 - -
Lsi10g00386 673 Pfam Dihydrofolate reductase 56 231 IPR001796 GO:0004146|GO:0046654
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00386 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 928.317
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00386 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.366156 0.0 1.274074 0.0 0.0 0.0