Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00389 ATGGCGGCTGCAAATCTCTGCTCTCCTTCACCTTCCTTTCCCAGCACCCTCAAACACTCTCTTAACTCAAACCCTTTTCCCCGTCTTACTTTTCGACTTCACAAACCCTTTTCCAAGACTCCCCTCTCCTTAAAAGCTGTTCTTTCTCAAAACCCTTCTAAAACCCAGACCCAATTTCACCATTGTTTCTCCAAATCCTCAGATGGGTTTCTTTATTGCGAGGGAATTAAGGTGCAGGACATTATGGAGTCTGTTGATAAGCGCCCTTTCTATCTTTACAGCAAACCCCAGATAACTAGAAATGTTGAGGCTTATAAAGAGGCTTTGGAAGGGCTGAATTCGATCATTGGTTATGCAATTAAGGCCAATAATAATTTGAAAGTGTTGGAGCATTTGAGGAAGTTGGGTTGTGGAGCTGTGCTTGTTAGTGGAAATGAGCTCCGCTTGGCTCTTCATGCCGGTTTTGACCCCACCAGATGTATTTTTAATGGGAATGGTAAACTTTTGGAGGATTTGGTTCTAGCTGCGGAACAAGGTGTTTTTGTCAATGTGGATAGTGAGTTTGACTTGGACAATATTGTGGCTGCTGCAAGAATTTCTGGAAAGAAAGTTAATGTTTTACTTCGTATTAATCCGGATGTAGACCCTCAGGTACATCCTTACGTTGCCACGGGTAATAAAAACTCCAAATTTGGTATTAGGAATGAAAAATTGCAATGGTTTCTGGATGCTGTTAAGGCACATCCTGATGAGCTTAAGCTTGTTGGGGCCCATTGCCATCTTGGTTCCACCATCACCAAGGTGGACATATTCAGAGATGCTGCAGTACTAATGGTCAACTACATTGACCAGATCAGAGATCAAGGTTTTGAAGTTAATTACTTAAACATTGGTGGTGGACTTGGGATAGATTATTATCATGCTGGTGCCATTCTTCCTACCCCTAGAGATCTCATTAATACGGTACGGGAGCTGGTCCTTTCACGAGATCTTAATCTAATCATTGAACCCGGCAGATCACTTATTGCCAATACTTGCTGTTTGGTTAATCGAGTCACGGGGGTCAAAACTAATGGGACCAAAAACTTTATTGTAATTGATGGAAGCATGGCTGAACTTATCCGCCCTAGTCTTTATGATGCTTATCAACACATAGAGTTGGTTGCTCCTTCATCACCTGGTGCTGAGATCTCGACTTTTGATGTGGTTGGCCCTGTCTGCGAGTCTGCAGATTTCTTAGGAAAGCAAAGGGAACTCCCAACTCCAACCAAGGGGGCTGGCTTGGTTGTCCATGATGCTGGTGCTTACTGCATGAGTATGGCATCTACTTACAATCTCAAGATGCGTCCTCCCGAGTACTGGGTTGAGGAGGATGGATCAGTGTCCAAAATCAGGCATGGTGAGACATTCGACGATCACCTCCGGTTCTTCGAAAATCTTTGA 1443 43.66 MAAANLCSPSPSFPSTLKHSLNSNPFPRLTFRLHKPFSKTPLSLKAVLSQNPSKTQTQFHHCFSKSSDGFLYCEGIKVQDIMESVDKRPFYLYSKPQITRNVEAYKEALEGLNSIIGYAIKANNNLKVLEHLRKLGCGAVLVSGNELRLALHAGFDPTRCIFNGNGKLLEDLVLAAEQGVFVNVDSEFDLDNIVAAARISGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPDELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDQIRDQGFEVNYLNIGGGLGIDYYHAGAILPTPRDLINTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVAPSSPGAEISTFDVVGPVCESADFLGKQRELPTPTKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGETFDDHLRFFENL 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5912209 5917125 - Lsi10G003890.1 Lsi10g00389 671946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00389 480 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 289 302 IPR022657 -
Lsi10g00389 480 PRINTS Diaminopimelate decarboxylase signature 361 379 IPR002986 GO:0008836|GO:0009089
Lsi10g00389 480 PRINTS Diaminopimelate decarboxylase signature 136 153 IPR002986 GO:0008836|GO:0009089
Lsi10g00389 480 PRINTS Diaminopimelate decarboxylase signature 444 466 IPR002986 GO:0008836|GO:0009089
Lsi10g00389 480 PRINTS Diaminopimelate decarboxylase signature 224 233 IPR002986 GO:0008836|GO:0009089
Lsi10g00389 480 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 54 477 - -
Lsi10g00389 480 PANTHER DIAMINOPIMELATE DECARBOXYLASE 54 477 - -
Lsi10g00389 480 SUPERFAMILY PLP-binding barrel 88 344 IPR029066 -
Lsi10g00389 480 Gene3D Alanine racemase 95 340 IPR029066 -
Lsi10g00389 480 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 138 150 IPR000183 GO:0003824
Lsi10g00389 480 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 434 447 IPR000183 GO:0003824
Lsi10g00389 480 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 118 136 IPR000183 GO:0003824
Lsi10g00389 480 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 251 264 IPR000183 GO:0003824
Lsi10g00389 480 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 333 352 IPR000183 GO:0003824
Lsi10g00389 480 TIGRFAM lysA: diaminopimelate decarboxylase 66 474 IPR002986 GO:0008836|GO:0009089
Lsi10g00389 480 Hamap Diaminopimelate decarboxylase [lysA]. 75 478 IPR002986 GO:0008836|GO:0009089
Lsi10g00389 480 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 97 343 IPR022644 GO:0003824
Lsi10g00389 480 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 118 136 IPR022653 -
Lsi10g00389 480 SUPERFAMILY Alanine racemase C-terminal domain-like 319 475 IPR009006 GO:0003824
Lsi10g00389 480 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 76 474 IPR009006 GO:0003824
Lsi10g00389 480 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 344 434 IPR022643 GO:0003824
Lsi10g00389 480 CDD PLPDE_III_DapDC 89 455 IPR002986 GO:0008836|GO:0009089
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00389 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] - csv:101208417 915.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00038 Lsi-Chr8:918903 Lsi10g00389 Lsi-Chr10:5912209 3.40E-07 dispersed
Lsi08g01288 Lsi-Chr8:21241264 Lsi10g00389 Lsi-Chr10:5912209 1.50E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g352 . . . . . . . . . . . Cma20g00836 . Car20g00722 . . . . . . . . . . . . . . . . . . . . . Lsi10g00389 . Chy11g00364 . . . . . . . . . Sed01g0290 . Cmo20g00844 . . . . Cpe16g00254 . Bhi10g01983 Tan05g1282 Cmetu11g0387 . . . . . . . . . . . . Csa02g01279 . Cme11g00133
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011287 1 1 1 1 1 0 2 0 1 1 1 1 1 1 1 1 1 2 1 0 1 1 0 0 1 1 1 2 1 2 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00389 Lsi_Chr10 FPKM 7.615251 7.874106 11.697165 12.594826 14.226071 13.817408 14.942278 24.399227 23.457458 26.69977