Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00391 ATGTCTGGACCATTGGATCGATTTGCTAGACCATGCTTTGAAGGGTTCTCTGGTAGTGATGAAAGGAAAGAAAGGAAATCTGATTTTGAAAATTCGGAGGATGAAAGGAGGACTAGAATTGGGTCTATAAAGAAGAAAGCTCTAAATGCATCTTCCAAATTTAAACATTCCCTCAAGAAGAAGAGCAGCAGGAGAAAAAGTGATGGTCGGGTCAGTTCTGTTTCTATTGAGGATGTTAGGGATGTTGAGGAGCTGCAGGCTGTTGATGCATTTCGTCAATCACTAATAATGGACGAATTACTGCCAGAAAAACATGATGATTATCACATGATGTTGAGAATCCATTACCACTTTGAATTGCTTGGAGTTTGGTTTTGTTCATATTGGATTATGTATAATGTTGGCTATTTTTCCACACCTGCTGTAAAAGGTTCATGGAGGCCTATAATGCCTGAATCAAGCACGGAAAACTATCATTCTCTCTGTCTCTCCTTTCAATCATTAGCTTGTTTTTTGGCCTTTGGTAACACTCGGAAATTTGATATTGAAAAAGCTAAGCATATGTGGGCTGATATGCTTCAGTGGAGGAAGGAGTTTGGTGTTGACACAATAGGTGAAGACTTTGAATTCAAAGAGAAAAATGAAGTTCTGAGGTACTATCCTCATGGTTATCATGGGGTGGATAAAGAAGGAAGACCTGTTTACATTGAAAGGTTGGGAAAAGTGGATCCAAACAAACTTATGCAAGTGACGACTATGGATCGATATATAAAGTACCACGTTCAGGAGTTTGAGAAAAGTTTTGCTATCAAGTTTCCAGCTTGTTCTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATCTTGGATGTCCAAGGCGTGGGCCTCAAGAATTTCACGAAGTCTGCTAGGGAACTCATCATGCGGCTGCAGAAAGTTGATGGTGACAATTACCCAGAAACTCTCAGCCAAATGTATATTATCAATGCTGGTCCTGGATTCCGGATGCTATGGAACACCGTGAAGTCTTTCCTTGACCCCCGGACGACATCTAAAATCCATGTTCTCGGGAACAAGTACCAAAATAAATTACTTGAAATAATTGATTCCAGTGAGTTGCCAGAATTTCTGGGCGGAAGTTGTAACTGTGCAGATTTGGGGGGATGCCTTCGATCAGACAAGGGGCCATGGAGAAACCCAGAAATTTTGAAGATGATTCTTAATGGCGAAGCACGACGCGCTAGGCAGGTTGTCAAAGTTCTAAATAGTGAAGGCAAGGTTGTTGCGTATGCTAAGCCACATTACCCAATGGTGAAAGGCAGCGATACATCAACTGCTGAGTCAGGATCTGAAGCTGAAGACATCGCTTCTCCTAAAGCAATGAAGAGCTATTCTCATCTTCGACTGACTCCTGTTCGAGAAGAAGCAAGAGTTGGTGGGAAAGGAGGTTTTGCCGCTAACTTCTCTGGGTATGATGAATATGTTCCCATGGTTGACAAAGCTGTTGATGCTGGATGGAAGAAGCAAGTTTCACTCCAACGACCTAGTGCCTCTAAAGGGGTTCTTCCACTGCCTAACACTCAAAAAGCACCCGAAGCACTTCATGCTCGAATGTTGGTAGTATTCATGGGCTTCTTCATAGCCATTTTTGCTCTTCTCCGTTCACTGGCATTCCAGATAAGTGGGAAGAATTTGTCTATTGGTAGTCAAAACACTGCAGAATTGTCATCCCTTGATAAAACGGCCACCGAGGAGAATCGCCCCCCTTCACCAATTGCTAAATTTACCGAAGCGGAACTTCTCTCTAATGTTATGAAGAGGCTAGGTGAGCTGGAGGAGAAGGTCGATACGCTCCAATCAAAACCTTCTGAAATGCCATATGAAAAAGAGGAACTGTTGAATGCCGCTGTCTGCCGTGTTGATGCCTTGGAAGCAGAGCTCATTGCTACCAAGAAGCTTGTTGTAATATTCACATATGGGTCACTTGTTATATTGTATCGACACATACACTTAACTCGCAATTTTGCCGAGCAGGCTTTGCACGAAGCGTTGATGAGGCAAGAAGAATTGCTTGCTTACATCGATAGCCAAGAGGAAGCAAAATTGCGGTATTTTACTCTTTTACCTCCC 2133 42.66 MSGPLDRFARPCFEGFSGSDERKERKSDFENSEDERRTRIGSIKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPEKHDDYHMMLRIHYHFELLGVWFCSYWIMYNVGYFSTPAVKGSWRPIMPESSTENYHSLCLSFQSLACFLAFGNTRKFDIEKAKHMWADMLQWRKEFGVDTIGEDFEFKEKNEVLRYYPHGYHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYIKYHVQEFEKSFAIKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKVDGDNYPETLSQMYIINAGPGFRMLWNTVKSFLDPRTTSKIHVLGNKYQNKLLEIIDSSELPEFLGGSCNCADLGGCLRSDKGPWRNPEILKMILNGEARRARQVVKVLNSEGKVVAYAKPHYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEARVGGKGGFAANFSGYDEYVPMVDKAVDAGWKKQVSLQRPSASKGVLPLPNTQKAPEALHARMLVVFMGFFIAIFALLRSLAFQISGKNLSIGSQNTAELSSLDKTATEENRPPSPIAKFTEAELLSNVMKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKLVVIFTYGSLVILYRHIHLTRNFAEQALHEALMRQEELLAYIDSQEEAKLRYFTLLPP 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5931431 5942596 - Lsi10G003910.1 Lsi10g00391 671948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00391 711 SUPERFAMILY CRAL/TRIO N-terminal domain 165 207 IPR036273 -
Lsi10g00391 711 MobiDBLite consensus disorder prediction 16 42 - -
Lsi10g00391 711 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 678 704 - -
Lsi10g00391 711 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 171 654 - -
Lsi10g00391 711 MobiDBLite consensus disorder prediction 1 42 - -
Lsi10g00391 711 SMART sec14_4 212 383 IPR001251 -
Lsi10g00391 711 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 114 - -
Lsi10g00391 711 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 171 654 - -
Lsi10g00391 711 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 212 386 IPR001251 -
Lsi10g00391 711 SUPERFAMILY CRAL/TRIO domain 214 405 IPR036865 -
Lsi10g00391 711 Coils Coil 602 622 - -
Lsi10g00391 711 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 3 114 - -
Lsi10g00391 711 MobiDBLite consensus disorder prediction 51 70 - -
Lsi10g00391 711 Pfam CRAL/TRIO domain 218 380 IPR001251 -
Lsi10g00391 711 MobiDBLite consensus disorder prediction 51 66 - -
Lsi10g00391 711 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 678 704 - -
Lsi10g00391 711 CDD SEC14 213 380 IPR001251 -
Lsi10g00391 711 Gene3D - 145 199 - -
Lsi10g00391 711 Gene3D - 200 411 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00391 - - - cmo:103499694 1105.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00646 Lsi-Chr1:5208742 Lsi10g00391 Lsi-Chr10:5931431 1.07E-180 dispersed
Lsi02g01787 Lsi-Chr2:23635913 Lsi10g00391 Lsi-Chr10:5931431 2.63E-153 dispersed
Lsi02g02087 Lsi-Chr2:27059274 Lsi10g00391 Lsi-Chr10:5931431 2.45E-140 dispersed
Lsi04g01657 Lsi-Chr4:24041024 Lsi10g00391 Lsi-Chr10:5931431 1.38E-12 dispersed
Lsi05g00503 Lsi-Chr5:6326829 Lsi10g00391 Lsi-Chr10:5931431 9.16E-08 dispersed
Lsi10g00391 Lsi-Chr10:5931431 Lsi07g00394 Lsi-Chr7:4212826 1.50E-12 dispersed
Lsi10g00390 Lsi-Chr10:5923363 Lsi10g00391 Lsi-Chr10:5931431 2.94E-27 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00391 Lsi_Chr10 FPKM 19.268116 19.946316 19.701063 17.924383 34.209942 29.333103 26.074409 32.186646 31.234718 27.770714