Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00392 ATGGCTTCCTCTAGTGGAACATCTTCGACTTCTTCATCCATGGAAGAAGGGGAATTAGCAGCGTTGATGGAACAGAGGAAGAGAAAAAGGATGATTTCGAATCGGGAATCGGCGAGGAGATCGAGAATGAGGAAGCAAAAGCATTTGGATGATTTAATGACTATGGTGAGTCAACTCAGAAAGGATAATCAACAAATTGTCGCTAATCTCGCCGTCACCACGCAGCACTACGCCGCCGTCGAGGCTGAGAATTCCATTCTCAAAGCTCAGGCCTCCGAGCTCTCTCACCGTTTGCAATCCTTGAATGAGATCGTCGCTTTCTTGAACCCCTCTGATGGGGTTTTTGAAGATGATTCTTACGGCTGCGACGGCGGCGGTGGCGGTGGCGGCGGTGGAGGGTTTTTTAATCCTCTGCAAATGGCTTTCTATATGAGCCAGCCCCTTATGGCTTCTGCAGATGTATTTCAAGAGTATTAA 477 48.22 MASSSGTSSTSSSMEEGELAALMEQRKRKRMISNRESARRSRMRKQKHLDDLMTMVSQLRKDNQQIVANLAVTTQHYAAVEAENSILKAQASELSHRLQSLNEIVAFLNPSDGVFEDDSYGCDGGGGGGGGGGFFNPLQMAFYMSQPLMASADVFQEY 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5982268 5982744 + Lsi10G003920.1 Lsi10g00392 671949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00392 158 MobiDBLite consensus disorder prediction 20 46 - -
Lsi10g00392 158 Coils Coil 77 97 - -
Lsi10g00392 158 PANTHER BZIP TRANSCRIPTION FACTOR 1 155 - -
Lsi10g00392 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 24 87 IPR004827 GO:0003700|GO:0006355
Lsi10g00392 158 MobiDBLite consensus disorder prediction 1 16 - -
Lsi10g00392 158 SMART brlzneu 22 86 IPR004827 GO:0003700|GO:0006355
Lsi10g00392 158 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 155 - -
Lsi10g00392 158 MobiDBLite consensus disorder prediction 1 46 - -
Lsi10g00392 158 CDD bZIP_plant_GBF1 27 78 IPR045314 GO:0003700|GO:0006355
Lsi10g00392 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 29 44 IPR004827 GO:0003700|GO:0006355
Lsi10g00392 158 Gene3D - 24 78 - -
Lsi10g00392 158 SUPERFAMILY Leucine zipper domain 26 77 IPR046347 GO:0003700|GO:0006355
Lsi10g00392 158 Pfam bZIP transcription factor 25 79 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00392 K25786 BZIP1S; bZIP transcription factor 1/2/11/44/53 - csv:105434407 263.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00783 Lsi-Chr9:8896910 Lsi10g00392 Lsi-Chr10:5982268 1.82E-16 dispersed
Lsi01g00644 Lsi-Chr1:5188660 Lsi10g00392 Lsi-Chr10:5982268 8.50E-32 wgd
Lsi10g00392 Lsi-Chr10:5982268 Lsi04g01702 Lsi-Chr4:24401526 1.44E-37 wgd
Lsi10g00392 Lsi-Chr10:5982268 Lsi07g00243 Lsi-Chr7:2655897 2.30E-42 wgd
Lsi10g00392 Lsi-Chr10:5982268 Lsi08g01371 Lsi-Chr8:21992575 1.85E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g348 . Blo15g00708 . . Bpe07g00418 . . Bma12g00501 . . Cma02g00382 Cma20g00832 Car02g00247 Car20g00717 . . . . . . . . . . . . . . . . . . Cone12ag0777 Cone6ag1649 Cone9ag1573 Lsi10g00392 . Chy11g00361 . . . . . . . . . Sed05g3527 Cmo02g00388 Cmo20g00841 . . . . Cpe16g00257 Cpe05g01275 Bhi10g01980 Tan05g1278 Cmetu11g2335 . Hepe08g0998 . . . . . . . . . . Csa02g01282 . Cme11g00136
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011503 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26015 PF00170 bZIP_1 7.70E-10 CL0018 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00392 Lsi_Chr10 FPKM 27.703962 26.683727 4.800535 5.608876 8.367075 9.591284 8.608945 4.037446 3.736556 2.735687