Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00398 ATGTTCTCACTTTCGCATTCAATTTCTCAATCTCCCACCAATTTTCCCTCTCTTTCCACCCCTTCAATCCCCTTTAAGCCCACCTCTCTTTTCTCCCATTTCTCCACTTCCTCCTTACCATCACCTACTTCCCTCTTCGTTTCTCTCCCTTTCCGCCCTTCCCAGTTCGTTTCTTCAGTTATGTCGTCCAATTCACAGTTCTCTAACGATGTCGACACTGCCATTGACATGGGTTTTGATGGTCATGACTTCGATCGCTTTGCGGAGGTTGCCAACAGGGTCGCGGATGCTGCTGGGGAAGTCATTCGGAAGTACTTTCGCAAGAAGTTCGAGATCATTGATAAGGCGGATTTCAGTCCTGTGACTGTGGCTGATCAAGCAGCAGAGGAGTCTATGGTTTCAGTTATATTGGAGAACTTCCCTTCTCATGCTATTTATGGTGAGGAAAAGGGATGGAGATGCAAAGAGAATTCAGCTGATTATGTTTGGGTTTTAGATCCCATTGATGGCACAAAGAGTTTTATTACTGGAAAGCCCCTGTTTGGAACTCTCATTGCATTGTTATATAGAGGGAAACCAATTTTGGGCATCATTGATCAGCCTGTTCTGAGAGAAAGATGGATAGGATTAAATGGGAGGAGAACTACATTGAATGGGCAAAGCGTATCTACAAGAACTTGTTCAGACATATCACAGGCCTATTTATATACTACGAGCCCTCACCTTTTCAGTGGAGAAGCAGATGAGGCATTTTCTCGTGTGAGGAACAAGGTAAAAGTTCCCCTGTATGGTTGTGACTGCTACGCATATGCCCTTTTAGCGTCTGGTTTTGTAGATCTTGTGATTGAATCTGGGCTCAAGCCGTATGATTTCCTTTCTCTAATACCCATAATCAAAGGGGCTGGTGGTGAAATAACCGATTGGAAAGGAGATGAGCTTTATTGGGAAGCCTCACCTAATTCCCAAGCAACAAGTTTTAACGTGTTAGCAGCTGGGGATAAAGATATACATCAACAAGCCCTTGAATCATTAAGATGGGTCTGA 1044 43.97 MFSLSHSISQSPTNFPSLSTPSIPFKPTSLFSHFSTSSLPSPTSLFVSLPFRPSQFVSSVMSSNSQFSNDVDTAIDMGFDGHDFDRFAEVANRVADAAGEVIRKYFRKKFEIIDKADFSPVTVADQAAEESMVSVILENFPSHAIYGEEKGWRCKENSADYVWVLDPIDGTKSFITGKPLFGTLIALLYRGKPILGIIDQPVLRERWIGLNGRRTTLNGQSVSTRTCSDISQAYLYTTSPHLFSGEADEAFSRVRNKVKVPLYGCDCYAYALLASGFVDLVIESGLKPYDFLSLIPIIKGAGGEITDWKGDELYWEASPNSQATSFNVLAAGDKDIHQQALESLRWV 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6062696 6068050 + Lsi10G003980.1 Lsi10g00398 671955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00398 347 CDD Bacterial_IMPase_like_1 87 341 - -
Lsi10g00398 347 PANTHER 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 82 345 - -
Lsi10g00398 347 Gene3D - 76 222 - -
Lsi10g00398 347 PRINTS Inositol monophosphatase superfamily signature 141 157 IPR000760 GO:0046855
Lsi10g00398 347 PRINTS Inositol monophosphatase superfamily signature 286 310 IPR000760 GO:0046855
Lsi10g00398 347 PRINTS Inositol monophosphatase superfamily signature 119 139 IPR000760 GO:0046855
Lsi10g00398 347 PRINTS Inositol monophosphatase superfamily signature 163 179 IPR000760 GO:0046855
Lsi10g00398 347 PRINTS Inositol monophosphatase superfamily signature 212 235 IPR000760 GO:0046855
Lsi10g00398 347 TIGRFAM his_9_HisN: histidinol-phosphatase 88 344 IPR011809 GO:0004401
Lsi10g00398 347 ProSitePatterns Inositol monophosphatase family signature 1. 163 176 IPR020583 -
Lsi10g00398 347 PANTHER PHOSPHATASE 82 345 - -
Lsi10g00398 347 Gene3D - 223 346 - -
Lsi10g00398 347 Pfam Inositol monophosphatase family 86 317 IPR000760 GO:0046855
Lsi10g00398 347 SUPERFAMILY Carbohydrate phosphatase 84 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00398 K18649 IMPL2; inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase / histidinol-phosphatase [EC:3.1.3.25 3.1.3.93 3.1.3.15] - csv:101205614 603.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01118 Lsi-Chr2:13000937 Lsi10g00398 Lsi-Chr10:6062696 8.63E-12 dispersed
Lsi10g00398 Lsi-Chr10:6062696 Lsi02g01117 Lsi-Chr2:12980729 2.23E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g341 . . . . . . . . . . . Cma20g00827 . Car20g00712 . . . . . . . . . . . . . . . . . Cone12ag1167 Cone8ag1215 . . Lsi10g00398 . Chy11g00353 . Blo04g00524 . . . . . . . Sed01g0282 . Cmo20g00837 . . . . Cpe16g00262 . Bhi10g01970 Tan05g1265 Cmetu11g1211 . Hepe08g0993 . . . . . . . . . . Csa02g01288 . Cme11g00142
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011027 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00398 Lsi_Chr10 FPKM 3.827409 5.088513 4.8483 4.705744 2.224912 3.118806 2.722918 15.662872 15.722769 15.250493