Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00399 ATGGAAATTATATGGCGCTTCCTTCAGCCGCCCTTCCCTGCGAGAAACCCATTTGGGCGAATTCTTTATAATTTTTTTCCCACTACTTACCCGTTCGATTCTTCCCAATCCCAGAATCTACACTCAAACCCCCAAAACCCCTTTCAATTCCCACTTCCAATGGCTTCCCAGCAGCAGTTATCCGCCATTAAGGGCGCTAAAGTGCTGATGGTCGGTGCGGGGGGAATCGGCTGCGAGCTTCTCAAGACTTTGGCTCTCTCGGGGTTTCAGGACATTCATATTATTGACATGGACACCATAGAAGTGAGCAACTTAAACCGACAATTTTTATTCAGAAAATCCCATGTAGGGCTATCAAAGGCTAAGGTTGCTCGGGATGCCGTCTTAAGATTCAGACCTCACGTTAGCATTACCTCATATCATGCAAATGTCAAGAATCAAGAATTTAATGTAGATTTTTTTAAGCAATTTAGTGTTGTTTTGAATGGTCTCGACAACTTAGATGCAAGGCGTCATGTGAATCGTTTGTGCTTGGCAGCTGATGTTCCCTTAGTTGAAAGTGGAACCACTGGATTCCTTGGACAGTTTCTCCTTGGAAATACTGGCACAACAATGTTTAGTGAGGTGAAAATAGTGGAACCTATTTCTAATGAAGTGAAGTCACAGTCCATGTCAAGGGAAAAACAGAATGCTACGAGTGCCAGCCAAAACCAGCCCCAAAAACGTATCCTGTCTGTACCATTACCAGTACTCCGTCAAAGTAATCTTCTCAGAGACCTTACACTATCCGTTTATTTTCTTTCTTGTTCTTGTGGTCGAAAGTTTGTTCACTGCATTGTTTGGGCGAAAGATCTACTTTTTGCAAAGTTATTTGGAGATAAGAATCAAGAAAATGATCTAAATGTGCGTTCAAGTGATCCTGCAAGTTCATCAGACCATGCTGAAGATATATTTGAACTTAACAAAGATGAGACTATTGAGCACTATGGAAGAAGAGTATTTGATCATGTATTTGGGTACAATATTGAAGTAGCTTTATCTAATGAAGACACTTGGAAAAATCGCAACAAACCCAGGCCTATCTATAGTAGGGATATCCTTCCTGACGAACCAACTAAACAGAATGGAAACGCAGACAAAAACTGTGCGACTGATAGCCAATCCTTAATTTCTGCTATGACATCTCTAGGCATAAAAAATCCCCAGGAGATATGGTGTCTTATGGAAAATTCCAGAATCTTCATTGAGGCTATTAAACTTTTTTTCATGAAAAGGGAAAAGGATGTTGGGAACTTGGCTTTTGATAAAGATGATCAGTTAGCCGTGGAGTTCGTCACTGCTGCTGCAAACATTAGAGCTGAATCTTTTGGTATTCCAATGCATAGCCTTTTTGAATCTAAAGGCATTGCCGGTAACATTGTACATGCTGTTGCAACAACCAATGCGATTATTGCTGGGTTGATTGTGATTGAGGCAATTAAGGTGCTGCAAAACGATGCAAACAATTACAGGCATGTGGAGTTTCTTCATGTTGCTATGAGATTTCATATCATGATGACATATTGTCTTGAACATCCTTCAAGGAAGATGCTTCTTATGCCAGTGGAACCTTTTGAACCTAATAAATCCTGCTATGTTTGTTCTGAGACACCGCTATCGCTCGAGATAAATACGCATCGTGCAAAGCTGCGGGATTTTGTTGAGAAGATAGTCAAGGCCAAGCTTGGGATGAACTTTCCACTTATTATGCATGGAGCTGCCCTTCTTTATGAAGTTGGCGATGATCTTGATGAGGACATGGTGGCGAACTATAATGCAAACCTTGAGAAGGTACTATCGGAGCTTCCTTCACCTGTCGTTAGCGGGACAATATTATCGGTTGAGGATCTCCAACAAGAGCTTAGCTGCAGTATCAACATAAAACATAGAGATGAATTTGATGAGGAGAAGGAACCAGATGGTATGGTTCTATCTGGATGGCAGCAGACTTCACTGGAGAAGGGTGATAGCAGCAGAACTTTGGGCAATGGAGAAAGCACCTCCAAGACGTTGCCCTCTGCTACGGATGCTGATAAGAATGACGACTCAGACATTGTTGCATCTGGAAGGAAAAGAAAACTGGACGAGACGTCTTCAGCTGTCGATGTATCAAGTGAAGCTAATAGCTCAAAGAAACCTGAAGTGCTTGATGATGACGATGATGACCTTGTCATGCTTGATGATGGGGACTCAGCTATCAACAAGAAGAAAAGATTGCAATAG 2262 41.78 MEIIWRFLQPPFPARNPFGRILYNFFPTTYPFDSSQSQNLHSNPQNPFQFPLPMASQQQLSAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRKSHVGLSKAKVARDAVLRFRPHVSITSYHANVKNQEFNVDFFKQFSVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQFLLGNTGTTMFSEVKIVEPISNEVKSQSMSREKQNATSASQNQPQKRILSVPLPVLRQSNLLRDLTLSVYFLSCSCGRKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDPASSSDHAEDIFELNKDETIEHYGRRVFDHVFGYNIEVALSNEDTWKNRNKPRPIYSRDILPDEPTKQNGNADKNCATDSQSLISAMTSLGIKNPQEIWCLMENSRIFIEAIKLFFMKREKDVGNLAFDKDDQLAVEFVTAAANIRAESFGIPMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDANNYRHVEFLHVAMRFHIMMTYCLEHPSRKMLLMPVEPFEPNKSCYVCSETPLSLEINTHRAKLRDFVEKIVKAKLGMNFPLIMHGAALLYEVGDDLDEDMVANYNANLEKVLSELPSPVVSGTILSVEDLQQELSCSINIKHRDEFDEEKEPDGMVLSGWQQTSLEKGDSSRTLGNGESTSKTLPSATDADKNDDSDIVASGRKRKLDETSSAVDVSSEANSSKKPEVLDDDDDDLVMLDDGDSAINKKKRLQ 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6069494 6084679 - Lsi10G003990.1 Lsi10g00399 671956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00399 753 MobiDBLite consensus disorder prediction 688 712 - -
Lsi10g00399 753 PIRSF SUMO_E1B 270 735 IPR030661 GO:0016925|GO:0019948
Lsi10g00399 753 PIRSF SUMO_E1B 52 205 IPR030661 GO:0016925|GO:0019948
Lsi10g00399 753 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 270 668 - -
Lsi10g00399 753 MobiDBLite consensus disorder prediction 660 753 - -
Lsi10g00399 753 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 60 601 IPR035985 GO:0008641
Lsi10g00399 753 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 54 205 IPR045886 -
Lsi10g00399 753 Gene3D - 548 740 - -
Lsi10g00399 753 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 54 205 - -
Lsi10g00399 753 Pfam ThiF family 54 519 IPR000594 -
Lsi10g00399 753 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 270 668 IPR045886 -
Lsi10g00399 753 MobiDBLite consensus disorder prediction 220 239 - -
Lsi10g00399 753 MobiDBLite consensus disorder prediction 660 687 - -
Lsi10g00399 753 Pfam Ubiquitin-activating enzyme, SCCH domain 415 467 IPR019572 -
Lsi10g00399 753 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 271 472 IPR023318 -
Lsi10g00399 753 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 554 646 IPR028077 -
Lsi10g00399 753 Gene3D - 52 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00399 K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B [EC:6.2.1.45] - csv:101205378 1092.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01447 Lsi-Chr5:22346974 Lsi10g00399 Lsi-Chr10:6069494 2.81E-27 dispersed
Lsi10g00399 Lsi-Chr10:6069494 Lsi10g01453 Lsi-Chr10:18609440 1.57E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00399 Lsi_Chr10 FPKM 12.259117 15.505319 2.113942 2.1236 2.865599 1.445877 2.154538 0.320869 0.228707 0.0