Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00402 ATGGTGAGATTTGATGTTGTGTTGGTATTTGGGATTTTACTTTGGGATTTTTGGGCTCCGCCGATCGGGTGCTGTTTTCGAGCTTTTTTGTTCCCTCCGACAACCACAACCGTCGCGGATTTCAGGGAAAAATCTATGGCAACTTACTACTCTAATTCGAATAACGAAAGGGATGCTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAGCAATTCTTCCCCGGAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCATTGCCTTCGCAGGCGCAAAATGGTTGTGGTCAGACAACGTCCGTCGGAGCAGCGGGAACTACCCAACAGCAGCAAGAGTTTTTATCGAATCTTGGTGGTTCGCACATTGCTGAGCATGATTTCAATACATGGAGAGAGGACCGGAGTGAAATGCTTGGCACGAACTCGATGCGTGGCCCTACGAATGTTCTTCATGGTGGGCAGCATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATGACATACAGAAATTCGGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGTGAGGATGGCTGCAGAAATGGCGCTTCTAGAGACGAACAATTGAGAAATGGAGAAAATTTGCCACCTAATTTCCAAGAATTGGCTAAGGGTGAATTATCTCAATACAGAATGTCTAGTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGTTCACATGAGCATGAAATTAGAAGTGCAAAAAATGGTGAGGCAGGAACCAAAAATGACGGTTCGCTGCTCACTGCAAGCGGAGCATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCTCATGCCGAAAAGCAAGATTTGCAGAACAAGTTAACAAAGCTTTTATACATGTTGGATGAGAGAGGAATCTGCAATGGTGTGTTAAACTGCAGTCTCCTATCAGCAATAATGGTGCCTGTTTTAGGAAATGTAACATTGAATATCTTTGACGTTTGTGCACACTGTACTCAGCTTGCTAAGGCTGTGCGACAGCTGAATCGGTTTCCTAACACCAAGCAGTTAAATTTTCCGAAACGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCGTTTGATGTGATAGCCGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTCAGAGCTACCCGTAAAAGCCTGGGAGAGCATGAGAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATTCAGCAGCATGCTTGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTTCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCAAACTTAGACATGTCTCAAAATGTCTGTCTGCTGGAAACACATGTTCTTATATTATATTTGGCGTCGTCTATGGGCTTGTGCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGGAGTGTAGACATGGACTCTATATCATCATCTGAAAATGCTGGCAAGGCAACAAAAGGAGATAACAAGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGCCACCGAAATGTGTAGCGCCGGAGATATTATCGACTTAAAATCTGATCAAGTCTCTAATCTTGGAAATTCCAGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATTGAAGCCCGAAACGAGCTGGTAAAGCCAAATGAGGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTTCTGATGCAATTGTCCACTCTCAGGGAGAGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTCGGGACGGTTGGTGGGGTATCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATACCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCACAGCGTCTTCTCTCGGGGAAACGGTGCATTTTGAATGCGTAAATAGTGGGAATCCACAACCGAGGTTTGGCCCTTCCCATCTTTATCATGATTTTGTTGTGTAA 2433 44.76 MVRFDVVLVFGILLWDFWAPPIGCCFRAFLFPPTTTTVADFREKSMATYYSNSNNERDATPILYSRGSLLGSYEETAILPRNMMMHVNSGTYMDSLPSQAQNGCGQTTSVGAAGTTQQQQEFLSNLGGSHIAEHDFNTWREDRSEMLGTNSMRGPTNVLHGGQHLQGQGLSLTLSTQIPSAIQIPSMTYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQLRNGENLPPNFQELAKGELSQYRMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHEIRSAKNGEAGTKNDGSLLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDERGICNGVLNCSLLSAIMVPVLGNVTLNIFDVCAHCTQLAKAVRQLNRFPNTKQLNFPKRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVKLRHVSKCLSAGNTCSYIIFGVVYGLVQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAGKATKGDNKTFEDDKEEDLQQSASSTATEMCSAGDIIDLKSDQVSNLGNSSSNRLASFQNGAHIEARNELVKPNEELRPNVNNSSFFSDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGIPMPAGTHHGFAAMRGDDMYNATASSLGETVHFECVNSGNPQPRFGPSHLYHDFVV 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6095589 6099550 - Lsi10G004020.1 Lsi10g00402 671959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00402 810 SMART prehox3 246 456 IPR006563 -
Lsi10g00402 810 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 407 760 - -
Lsi10g00402 810 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 119 349 - -
Lsi10g00402 810 MobiDBLite consensus disorder prediction 195 212 - -
Lsi10g00402 810 Gene3D - 501 608 - -
Lsi10g00402 810 SMART HOX_1 506 599 IPR001356 GO:0003677
Lsi10g00402 810 MobiDBLite consensus disorder prediction 276 330 - -
Lsi10g00402 810 Pfam Associated with HOX 253 455 IPR006563 -
Lsi10g00402 810 Pfam Homeobox KN domain 523 591 IPR008422 GO:0003677|GO:0006355
Lsi10g00402 810 MobiDBLite consensus disorder prediction 299 330 - -
Lsi10g00402 810 MobiDBLite consensus disorder prediction 612 644 - -
Lsi10g00402 810 SUPERFAMILY Homeodomain-like 502 553 IPR009057 -
Lsi10g00402 810 MobiDBLite consensus disorder prediction 624 639 - -
Lsi10g00402 810 CDD homeodomain 506 596 IPR001356 GO:0003677
Lsi10g00402 810 MobiDBLite consensus disorder prediction 195 230 - -
Lsi10g00402 810 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 407 760 - -
Lsi10g00402 810 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 119 349 - -
Lsi10g00402 810 MobiDBLite consensus disorder prediction 276 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00402 - - - csv:101205137 1219.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02721 Lsi-Chr2:33526591 Lsi10g00402 Lsi-Chr10:6095589 2.77E-79 dispersed
Lsi03g02150 Lsi-Chr3:32633290 Lsi10g00402 Lsi-Chr10:6095589 2.20E-46 dispersed
Lsi10g00402 Lsi-Chr10:6095589 Lsi10g01137 Lsi-Chr10:15662058 3.11E-09 dispersed
Lsi10g00402 Lsi-Chr10:6095589 Lsi03g01817 Lsi-Chr3:29661765 3.79E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g4 . . . . . . Bma05g00433 . . . Cma02g00374 Cma20g00823 Car02g00241 Car20g00709 . . . . . . . . . . . . . . . . . Cone12ag1171 Cone8ag1218 Cone3ag1223 Cone10ag1108 Lsi10g00402 . Chy11g00350 . . . . . . . . . Sed02g0459 Cmo02g00381 Cmo20g00834 . . . . Cpe16g00265 Cpe05g01281 Bhi10g01966 Tan05g1259 Cmetu05g0753 . Hepe08g0990 . . . . . . . . . . Csa02g01292 . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010110 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00402 Lsi_Chr10 FPKM 1.211268 3.313896 13.826064 13.873282 0.426006 0.293347 0.247702 3.646817 4.866293 3.633823