Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00404 ATGGTCTCTGGAGTCTCTACTGAGATTCGTTGTCAAGAGCAGAAGACTGAGGATGGTAGCTCAATGAAGGAAGGAGGGGAGCTGGAGAAGGAGAAACAGAAGAAAAATGTGGATCTGGAACTTCTCAGCTGCTTGCTTCAACCTATGAGTATTGGTGTTGATCCGGATTATATTGGCACTCGTCGTCTCTTGCTTTATCGGAAGGCTGAAGCCGCGGTTCTCCGTCGTAAAGCACTTTCTATTGGTGTTATCCATAGGACTGGAGGTGCAATGGGAAAGGACTTACAGAGCCACCGAAGATCAAGTTTTAGCTCAAGTGCAAGTGATAATAGTCAGCTGCAGACTCGTAGAGTTGAATTTGCATATTCGTTCATAGGAATGCATTGTATATTTGATCAATGCAAAGCCGCTGTTACGGTTGTGAAGTTTGGGCACATGAGCTCTGATCTATTAGCATATGGGTCATCGGATGGGACCTTGACTGTATGCAATGTCTCTGAACCATCTTCATCCGTCAAGCAGTTGCTGGGCCATTCAAAAGACGTCACAGACTTTGATTTTTCATCAAATAATCAGTACATTGCATCGTCGTCCATGGATAAAACCGTTAGAGTATGGGAGATATCGAAAGGACTTTGCATTAGAGTAATCTATGGAGTAAATAATAACCTCCTCTCAGTTGGCAATGCAAATAAGGAAATCACGGTGCTTAATTTCAGCACTGGGAGGATTGTGACAAAATTAGTTCTTGATAGTGCGGTTACCTCCATGGATCATGATCACACTGGTCAGCTCCTTTTCTGTGGGGACGCAAATGGATATGTATACTCTGTGAGCATGAACTCTCATACAGGAGCATTATCCCGTACTCACCGCCAGTGGTGTAGTAGTCGGCGAAAATCTCCTGTATCTACTGTACAATATCGAAGCTTCTCTCTACTGGCCAGGGGCCCTGTATTGCTAACTTGCACTCAAGATGGGAACTTGTCTTTCTTCAGTATTGCTTTGGAAGTTCAAGGATATTTGACCCTCCGCTGCTCACTCAAATTAGCTCCAAGGATACATAGCATCCGTGCTTCGTTCTGCCCCCTACTCTCCCTGGAAAAAGGAGAGTACATTGGAAGTGAGGATTCAAATGTCTACTTCTATGATTTGACACGACCTAAACATACTTGTGTCAACAAGCTACAGGGCCACCGGTTTCCAGTTATTGGGGTTGCTTGGAATCATGGGGAGAATTTGTTGGCTTCATCAGATTTTTATGGGACGGTAATTGTATGGAAGAGATCGAAGATGACTTAG 1302 44.16 MVSGVSTEIRCQEQKTEDGSSMKEGGELEKEKQKKNVDLELLSCLLQPMSIGVDPDYIGTRRLLLYRKAEAAVLRRKALSIGVIHRTGGAMGKDLQSHRRSSFSSSASDNSQLQTRRVEFAYSFIGMHCIFDQCKAAVTVVKFGHMSSDLLAYGSSDGTLTVCNVSEPSSSVKQLLGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEISKGLCIRVIYGVNNNLLSVGNANKEITVLNFSTGRIVTKLVLDSAVTSMDHDHTGQLLFCGDANGYVYSVSMNSHTGALSRTHRQWCSSRRKSPVSTVQYRSFSLLARGPVLLTCTQDGNLSFFSIALEVQGYLTLRCSLKLAPRIHSIRASFCPLLSLEKGEYIGSEDSNVYFYDLTRPKHTCVNKLQGHRFPVIGVAWNHGENLLASSDFYGTVIVWKRSKMT 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6138079 6149110 - Lsi10G004040.1 Lsi10g00404 671961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00404 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
Lsi10g00404 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 211 - -
Lsi10g00404 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 433 - -
Lsi10g00404 433 Gene3D - 220 360 IPR015943 GO:0005515
Lsi10g00404 433 PANTHER WD REPEAT-CONTAINING PROTEIN 13 97 431 - -
Lsi10g00404 433 MobiDBLite consensus disorder prediction 11 31 - -
Lsi10g00404 433 Gene3D - 372 433 IPR015943 GO:0005515
Lsi10g00404 433 Pfam WD domain, G-beta repeat 172 206 IPR001680 GO:0005515
Lsi10g00404 433 Pfam WD domain, G-beta repeat 392 428 IPR001680 GO:0005515
Lsi10g00404 433 SMART WD40_4 389 428 IPR001680 GO:0005515
Lsi10g00404 433 SMART WD40_4 124 164 IPR001680 GO:0005515
Lsi10g00404 433 SMART WD40_4 241 279 IPR001680 GO:0005515
Lsi10g00404 433 SMART WD40_4 168 207 IPR001680 GO:0005515
Lsi10g00404 433 SMART WD40_4 299 333 IPR001680 GO:0005515
Lsi10g00404 433 SUPERFAMILY WD40 repeat-like 128 428 IPR036322 GO:0005515
Lsi10g00404 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 433 IPR001680 GO:0005515
Lsi10g00404 433 ProSitePatterns Trp-Asp (WD) repeats signature. 194 208 IPR019775 -
Lsi10g00404 433 MobiDBLite consensus disorder prediction 1 31 - -
Lsi10g00404 433 PANTHER WD REPEAT PROTEIN 26-RELATED 97 431 - -
Lsi10g00404 433 Gene3D - 127 219 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00404 K24739 WDR13; WD repeat-containing protein 13 - csv:101204649 739.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00404 Lsi-Chr10:6138079 Lsi01g00842 Lsi-Chr1:6715721 6.68E-18 dispersed
Lsi10g00404 Lsi-Chr10:6138079 Lsi02g02285 Lsi-Chr2:29422484 1.09E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00404 Lsi_Chr10 FPKM 28.800329 30.184368 58.729031 54.704567 5.326689 6.529585 5.719254 77.047218 80.085365 77.475464