Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00408 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGCGCCGCCTGTGATCGCCACGTCCACCTTGCAAACAAGCTCGCCGGGAAACACGACCGTTTCTCTCTCCTCCAATCCACCGGCGCCGCCGCTGCCGCCAATTCACTTCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCTTTTCTGTTCTGTCGCGAAGACAGAGCAATACTCTGTAGAGAATGTGATATTCCAATTCATGGCACTAGCGATCACACCCAGAAGCACAGCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGGCGACTTCTTCTACTTCTTCCTCCTCCTCCTCTGTCTCAGGCGGTGGCGAGGAAATTGAAGGTGAAATTGGGTTGTTGAAGAAGTGGTCAAGGAAGAGGGCTAAAATGGGGTGTAATAGTAAAGGGTTGGAGGAATTAGAGCAGCCATTGAATGTTGAAGAAAATGGAGTATCGTTTTCAAGAAGCAGTATTTCAGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTGGAGGAGTTTCTTGATTCTTCTATGTGCTGCTGA 603 51.24 MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHLANKLAGKHDRFSLLQSTGAAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHGTSDHTQKHSRFLLTGVKVSPSPATSSTSSSSSSVSGGGEEIEGEIGLLKKWSRKRAKMGCNSKGLEELEQPLNVEENGVSFSRSSISEYLESLPGWCVEEFLDSSMCC 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6209617 6210219 + Lsi10G004080.1 Lsi10g00408 671965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00408 200 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Lsi10g00408 200 Pfam B-box zinc finger 60 97 IPR000315 GO:0008270
Lsi10g00408 200 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Lsi10g00408 200 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 197 - -
Lsi10g00408 200 MobiDBLite consensus disorder prediction 110 131 - -
Lsi10g00408 200 MobiDBLite consensus disorder prediction 110 129 - -
Lsi10g00408 200 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 - -
Lsi10g00408 200 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi10g00408 200 SMART bboxneu5 58 105 IPR000315 GO:0008270
Lsi10g00408 200 CDD Bbox1_BBX-like 5 47 - -
Lsi10g00408 200 Gene3D Classic Zinc Finger 1 105 - -
Lsi10g00408 200 CDD Bbox1_BBX-like 62 105 - -
Lsi10g00408 200 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00408 - - - bhj:120089126 285.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01848 Lsi-Chr9:27319195 Lsi10g00408 Lsi-Chr10:6209617 7.96E-36 dispersed
Lsi10g00408 Lsi-Chr10:6209617 Lsi11g01330 Lsi-Chr11:21919157 1.48E-14 dispersed
Lsi10g00408 Lsi-Chr10:6209617 Lsi11g01136 Lsi-Chr11:19836786 1.04E-65 wgd
Lsi10g00408 Lsi-Chr10:6209617 Lsi08g01348 Lsi-Chr8:21779307 1.50E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26017 PF00643 zf-B_box 3.70E-06 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00408 Lsi_Chr10 FPKM 5.076991 4.813684 18.585203 17.881506 3.994269 3.785165 3.064294 2.515683 2.525367 2.471926