Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00411 ATGAGTGTTGAAACGGACGCGGTGCCTCCTCAATCAGGGAGCCGGCTTTACCTTGGGATGGATTTTGGTACTTCTGGCGCAAGATTTGCGCTCATTGACAAGGACGGGGATGTTTGTGCTGAAGGAAAGAGGGAGTATCCGCTTTATAAGATTGCTTCGAAAGAGGAGATGATTGATGTGAGATGTCCTGTATCCCGTTTCGTCTTTGGCCATGGAGTTGGATGGCACACTGCCCTACTGCTTAGATCGAAATTAAGCAGGAGCCACGAAACAATCGATTGGGCAAGATCATGGAAAACAACACTTTTTTCACTGCTTGAAGATGTTCCAAATCATTATTGTCATTTGGTGGCATCAATTTCTATAGATGGCACATCTGCAACTACCCTAATTGTGGACAGCATATACTTGCGCAGCAACACAGGACAGCCATTATCAAAGCCATTATTATACAATGAGAGTTGTCCTGACGCCTTACCATTGGTGAAGTCTATTGCTCCAGTGAACCATACAGTCTGCTCTGCATCATCTACTTTATGCAAGCTGGTTTCATGGTGGAATAGTGCTGACTCGAATAAAGAATCTGCTACATTGTTACATCAAGCAGATTGGTTGTTGTGGTTTCTACATGGAAAGCTTGGGATTTCGGATTATAATAATGCTTTGAAGGTTGGCTACGATCCTGAAATTGACTCTTACCCACCCTGGCTTCTTGCTCAACCATATTCTCAACTTTTACCAAACGTCAAAGCTCCTGGAACTTCTATTGGATATTTGAAAGAGGACATTAGGTCACAATTTGGTTTTCCAAACGATTGCATTGCATGCACAGGAACCACAGATAGTATTGCTGCATTTCTTGCAGCACGTGCAACACTGCCAGGGCAAGCTGTCACTTCCTTGGGCTCCACGCTTGCCATCAAACTATTGAGTACCAATAGGATTGACGATGCACGGTTTGGAGTGTACAGTCACCGACTTGACAATATGTGGCTCGTTGGAGGTGCTTCAAACACAGGAGGAGCTGTTCTTAGACAAATCTTTACTGATGAGCAATTAGAAGAATTGAGCAAACAAATCAATCCCATGAAAAGTTCTCCTTTCAATTATTATCCCTTGACTTCAATAGGAGAGAGATTTCCAGAGGCAGACCCACAAATGGCTCCCAGATTACATCCACGGCCAGAAAACGATGATCTAGGAGCAACTGAGGTTGAAGAAGTGTTCACAGCAGGAGGTGGATCCAAAAATGAGAAATGGACAAAGATACGAGAGAGAGTTCTTGGTTTGCCTGTGAGTCGAGCAAGTCAGACTGAGGCTGCCTATGGAGCTGCTCTATTGGCTTTAAGAGTACAAATGTGGATGAAAATCAAACCTGTGGCTCAAGAAGAGAAATACGGATGTTTTGCCATTTTGGTGGAGCAGAACCTTCAAAAATTGCTGATAAAATTGTATGCTTCTTATGCCAACACAACCTTTCAGTTTAGATTCATTCCTTTATCGAACTCGGACGGCAAAGACATTGAAAAATTATCAAATTATGTCTACACCAGTTCACATGGACTGTTACCTATGCAGCCTTTTGCTTTTCTAGTTTGTAGTGGCTTAAATCACTGCTGTAAAGTATTCCATCAGGAGAGAGGATGCGCCGAAGAGCGC 1659 43.28 MSVETDAVPPQSGSRLYLGMDFGTSGARFALIDKDGDVCAEGKREYPLYKIASKEEMIDVRCPVSRFVFGHGVGWHTALLLRSKLSRSHETIDWARSWKTTLFSLLEDVPNHYCHLVASISIDGTSATTLIVDSIYLRSNTGQPLSKPLLYNESCPDALPLVKSIAPVNHTVCSASSTLCKLVSWWNSADSNKESATLLHQADWLLWFLHGKLGISDYNNALKVGYDPEIDSYPPWLLAQPYSQLLPNVKAPGTSIGYLKEDIRSQFGFPNDCIACTGTTDSIAAFLAARATLPGQAVTSLGSTLAIKLLSTNRIDDARFGVYSHRLDNMWLVGGASNTGGAVLRQIFTDEQLEELSKQINPMKSSPFNYYPLTSIGERFPEADPQMAPRLHPRPENDDLGATEVEEVFTAGGGSKNEKWTKIRERVLGLPVSRASQTEAAYGAALLALRVQMWMKIKPVAQEEKYGCFAILVEQNLQKLLIKLYASYANTTFQFRFIPLSNSDGKDIEKLSNYVYTSSHGLLPMQPFAFLVCSGLNHCCKVFHQERGCAEER 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6236464 6242819 + Lsi10G004110.1 Lsi10g00411 671968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00411 553 SUPERFAMILY Actin-like ATPase domain 16 286 IPR043129 -
Lsi10g00411 553 SUPERFAMILY Actin-like ATPase domain 294 450 IPR043129 -
Lsi10g00411 553 Gene3D - 11 284 - -
Lsi10g00411 553 Gene3D - 399 492 - -
Lsi10g00411 553 Gene3D - 285 398 - -
Lsi10g00411 553 PANTHER SUGAR KINASE 15 450 - -
Lsi10g00411 553 PANTHER D-RIBULOSE KINASE 15 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00411 K22935 XK1, psk; D-ribulokinase [EC:2.7.1.47] - csv:101207446 751.895
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g20 . Blo15g00671 Bda06g00960 . . . . . . . . Cma20g00815 . Car20g00699 . . . . . . . . . . . . . . . . . . . . Cone10ag1101 Lsi10g00411 . Chy11g00341 . . . . . . . . . . . Cmo20g00823 . . . . Cpe16g00271 . Bhi10g01950 . . . Hepe08g0981 . . . . . . . . . . Csa02g01302 . Cme11g00164
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009802 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00411 Lsi_Chr10 FPKM 45.131111 50.067989 34.155102 32.298538 31.221588 30.459723 33.475296 28.69985 29.225784 32.162365