Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00412 ATGGTCCTTACTCACTACACTCCCATGGCGGATCTTTCGCTCTCTCTCGCTCCGTTCAGTTTTCAGGCGCCAAAAATGTCTTTCAAAATCTTCCATTCTCCTTCTTCTTCAATCACTCCTCAAATCCATAACCCCAAATTTCTCAATCCTCTCTCTCAGTCTCGCCCTTCCTTTCCCTTCACCCCCACAATTCGCTTTCCTTCCTCTTCCTCCCCTTTATCCATAACCCCTGTATCATCGCCGATTACTCGACGTTTCGCGGTTCCTCACGATGATCATGAGTGGGAAGTTAGTAGCCTCGAGATTGAGAACCAAATTGACAATGGAGTACAGGGAAATGAGCAGTTATTGGGGACTGGAATGGAAGAATTGGGGAGCCAAGGGTTGTTGAATCAGATGAAGGAGATTGTAACATTTACTGGACCTGCCATTGGGTTGTGGATTTGTGGACCATTGATGAGTCTCATTGACACTGCGGTTATAGGTCAGGGGAGCGCTGTTGAGCTTGCTGCTTTAGGCCCAGCGACAGTTTTATGTGATTATACGAGCTACGTGTTCATGTTTCTCAGTATAGCAACTTCAAATATGGTAGCCACGGCTCTTGCCAAACAGGATAAGGACGAAGTGCAGCATCACATATCTGTATTGCTATTTGTTGGGCTGATGTCTGGTTTCTTGATGCTCTTAGTTACCAAACTATTGGGTTCAATGGCGCTAACTGGTGGCAAACAGAGGTTCCATCAAGAATGTGACCACAGCATACTGATACGTCGACATGCTTCCTTGATTTCTTCTTTCGATGTTTACAGTATTCGAGGTTTGGCATGGCCTGCAATTCTCACTGGATGGGTTGCTCAGAGTGCAAGTCTTGGCATGAAAGATTCCTGGGGACCTCTGAAGGCTTTGGCAGTTGCGAGTATTGTAAATGGCATAGGTGATGTGGTTCTATGCATGTTTTTAGGATATGGTATTGCCGGTGCTGCATGGGCAACTATGGCATCACAGGTTATCGCAGCTTATATGATGATAGAGCAACTAAACGAGAAAGGATATAGTGGATATTCTCTATCCGTTCCCTCGCCTGGTGAATTTGTGTCAATACTTGGACTTGCTGCTCCTATAGTTTTTTACACTCTCCTCGTCTATCATGCTACGTCTATAGGCACATACACCATGGCTGCTCATCAGGTCATGAGTCAAACATTCTACATGTGTAGCGTATTGGGTGAACCTCTTTCTCAAACTGCCCAATCATTTATGCCTGGATTCATAAATGGAGTGAATCGTAGTTTGGATAAGGCTCGGATGCTACTCAAGTCACTCTTGATCATAGGAGCTATATTTGGTTTGGTATTAGGGACTATTGGAACGTCAGTTCCTTGGTTGTTCCCCAATCTCTTTACACCTGAAGTGAAGATTATTCAAGAGATGCATAAAGTGTTGATTCCATATTTCTTGGCGCTAGTCATAATGCCCGCAACGGTTTGCTTAGAAGGGACATTATTGGCTGGACGAGACCTAAAATTTATTAGTTTTTCAATGTGCGGATGCGTTTCTTTCGGTGCCCTTCTATTGCTGGCTCGGTTTCTTAATGCTCTTCGGCGTGTCCTCTCCCCCAATGGAGTGCTTTACAACAATGATTTGAGCCATTATAAAGTGGCGCCAAAAATGCCTTTCAAAATCCTCCATTGCTCTTCTTCAGTCACTCCTCGAATCCATAGCCCCAATATTCTCAGACCATTCTCTCCCCCTTCCTTTCCCTTCACCCATCAATCTCTCTCCTTCCCCACCATTTCCTTTCCTTCCTCTTCCTCCCCTCTACATCTCCATTTCTCGTCGCCGATTCGCCGCCGATTTGCGGTTCCTAACGAAGCCAGCGAGATTGAGAGCGAAATTGGCTTCGAAGTACAAGAAAATGAACAATTATTGGGGACTGGAGGAGAAGAATTGGGAAGCCAAGGGTTGTTGAGTCAGATGAAGGAGATTGTAACGTTTACTGGGCCTGCCATTGGATTGTGGATTTGTGGACCGTTGATGAGTCTCATTGACACTGCGGTTATTGGCCAGGGAAGCGCCGTTGAGCTTGCTGCTTTAGATCAAGAAGTTAATAGGTTGGAAGCTTTTGTGGGAATAAAGAATGCAGACATCATACCTGCATCAAACACTTATATTCAGATTCGAGGTTTGGCATGGCCTGCAATTCTTACTGGCTGGGTTGCTCAAAGTGCAAGTCTTGGCATGAAAGATTCCTGGGGACCTTTGAAGGCTTTGGCAGTTGCGAGTATTGTAAATGGGATAGGTGATGTGGTCCTGTGCATGTTTTTAGGATATGGTATTGCTGGTGCTGCATGGGCAACTATGGCATCGCAGGTTATTGCAGCTTATATGATGATAGAAGCACTAAATAAGAAAGGATACAATGGATATTCTCTATCGGTTCCCTCATCTGGTGAATTTTTGTCAATACTTGGACTTGCTGCTCCTGTGGTTTTTTATTCTCTCCTCATTTATTTTGCTACATCTATGGGCACACACACCATGGCTGCTCATCAGGTCATGATTCAAACATTTTGTATGTGTACCGTATGGGGTGAACCTCTTTCTCAAACTGCTCAGTCATTTATGCCTGGGTTGATAAATGGAGTGAATCGTAGTTTGGATAAGGCTTGGATGTTGCTAAAGTCACTCTTGATCATAGGAGCTATATTTGGCTTGGTATTAGGGACTATTGGAACTTCAGTTCCTTGGTTGTTCCCCAATCTCTTCACACCCGAAGAGAAGATTATTCAGGAGATGCATAAAGTGTTGATTCCATATTTCTTGGCGCTAGTCATAACACCCCCGACTCATAGCTTAGAAGGGACATTATTGGTTATTAGCAGTAGGGGTTATGGTTTGACAGGCTGCTGGTATGCCCTGGTTGGATTTCAATGGGCTCGGTTTCTTAGCGCTCTTCAACGCATCCTTTCTCCTGATGGAATACTTTACAGCAGTGATTTAAGCCATTATAAACTACAAAAGCAAAAGGCTGCATAG 3036 44.47 MVLTHYTPMADLSLSLAPFSFQAPKMSFKIFHSPSSSITPQIHNPKFLNPLSQSRPSFPFTPTIRFPSSSSPLSITPVSSPITRRFAVPHDDHEWEVSSLEIENQIDNGVQGNEQLLGTGMEELGSQGLLNQMKEIVTFTGPAIGLWICGPLMSLIDTAVIGQGSAVELAALGPATVLCDYTSYVFMFLSIATSNMVATALAKQDKDEVQHHISVLLFVGLMSGFLMLLVTKLLGSMALTGGKQRFHQECDHSILIRRHASLISSFDVYSIRGLAWPAILTGWVAQSASLGMKDSWGPLKALAVASIVNGIGDVVLCMFLGYGIAGAAWATMASQVIAAYMMIEQLNEKGYSGYSLSVPSPGEFVSILGLAAPIVFYTLLVYHATSIGTYTMAAHQVMSQTFYMCSVLGEPLSQTAQSFMPGFINGVNRSLDKARMLLKSLLIIGAIFGLVLGTIGTSVPWLFPNLFTPEVKIIQEMHKVLIPYFLALVIMPATVCLEGTLLAGRDLKFISFSMCGCVSFGALLLLARFLNALRRVLSPNGVLYNNDLSHYKVAPKMPFKILHCSSSVTPRIHSPNILRPFSPPSFPFTHQSLSFPTISFPSSSSPLHLHFSSPIRRRFAVPNEASEIESEIGFEVQENEQLLGTGGEELGSQGLLSQMKEIVTFTGPAIGLWICGPLMSLIDTAVIGQGSAVELAALDQEVNRLEAFVGIKNADIIPASNTYIQIRGLAWPAILTGWVAQSASLGMKDSWGPLKALAVASIVNGIGDVVLCMFLGYGIAGAAWATMASQVIAAYMMIEALNKKGYNGYSLSVPSSGEFLSILGLAAPVVFYSLLIYFATSMGTHTMAAHQVMIQTFCMCTVWGEPLSQTAQSFMPGLINGVNRSLDKAWMLLKSLLIIGAIFGLVLGTIGTSVPWLFPNLFTPEEKIIQEMHKVLIPYFLALVITPPTHSLEGTLLVISSRGYGLTGCWYALVGFQWARFLSALQRILSPDGILYSSDLSHYKLQKQKAA 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6242937 6264090 - Lsi10G004120.1 Lsi10g00412 671969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00412 1011 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 75 526 IPR044644 -
Lsi10g00412 1011 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 956 1000 IPR044644 -
Lsi10g00412 1011 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 576 699 - -
Lsi10g00412 1011 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 956 1000 - -
Lsi10g00412 1011 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 705 957 - -
Lsi10g00412 1011 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 576 699 IPR044644 -
Lsi10g00412 1011 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 705 957 IPR044644 -
Lsi10g00412 1011 Pfam MatE 147 234 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lsi10g00412 1011 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 75 526 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00412 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101207199 838.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00412 Lsi-Chr10:6242937 Lsi10g01062 Lsi-Chr10:14868676 9.66E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g24 . . Bda06g00961 . . . . Bma12g00541 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00412 . . . Blo04g00535 . . Bda14g00576 . . Bma03g00570 . Sed01g0265 Cmo02g00371 . . . . . Cpe16g00272 Cpe05g01288 Bhi10g01946 Tan05g1243 Cmetu11g1869 . Hepe08g0979 . . . . . . . . . . Csa02g01304 . Cme11g00165
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00412 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0