Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00414 ATGGAGGCCATCCGAAAGCAAGCCACCAAGCTCCGTGAACAGGTCGCTCGTCAGCAACAGGCTGTACTCAAACAGTTTGGTGCCGGAGGATATGGAGGTTCAGATAACATTATTACGGATGAGGCAGAACTTCACCAACATCAAAAACTAGAAAAGTTGTATATATCAACTCGTGCTGGAAAGCACTTTCAAAGGGATATTGTACGAGGAGTAGAGGGCTATATTGTTACCGGTTCAAAACAAGTTGAAATAGGAACAAAGTTGTCAGAGGATAGCAGGAAATATGGTTCTGAAAATACATGCACTAGTGGCAACACATTATCGAAAGCTGCATTAAATTATGGACGCGCCCGAGCTCAAATGGAGAAAGAGCGTGGAAACATGTTGAAGGCTCTTGGCACTCAGGTAGCAGAGCCATTGAGAGCAATGGTTATGGGTGCTCCTTTGGAGGACGCTCGACATCTTGCTCAACGTTATGACAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAGGTTTTCAAGCGCCAGGCAAGAGTGAGGGAAACACCAGGCAATGCTGAGATTACTGTGAAGTTGGAAGCTGCTGAAGCGAAATTGCAAGATCTAAAGTCAAATATGGCAACAATGGGAAAGGAAGCTGCAGCAGCCATGGCTGCTGTTGAAGCTCAACAACAAAGGCTAACTCTCCAGCGACTCATTGCCATGGTTGAAGCAGAACGTGCTTACCATCAGAGAGTCCTTCAGATACTTGATCAGCTTGAAGGCGAGATGATATTGGAGCGGCAGAGAATTGAAGCTCCTCCTACTCCTCCTCCTCCTGGTCCAAGTGTCGACAATACCATGCCACCTCCCCCATCATATGAAGAAGTCAATGGTGTTATGCATCCCTACCTAGCCGAGTCAGATGTCGAGCTCAATTTATCAGTTGGTGATTACGTCGTTGTTAGAAAGGTGTCGAACAACGGTTGGGCCGAGGGAGAGTGCAAAGGTAGAGCAGGTTGGTTCCCGTTTGGATACATCGAAAGAAGAGAACGTGTACTTGCAAGTAAGGTTGCTGAGGTGTTTTGA 1071 46.78 MEAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTSGNTLSKAALNYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARVRETPGNAEITVKLEAAEAKLQDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMILERQRIEAPPTPPPPGPSVDNTMPPPPSYEEVNGVMHPYLAESDVELNLSVGDYVVVRKVSNNGWAEGECKGRAGWFPFGYIERRERVLASKVAEVF 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6279900 6284354 - Lsi10G004140.1 Lsi10g00414 671971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00414 356 PANTHER SH3 DOMAIN-CONTAINING 1 289 - -
Lsi10g00414 356 Coils Coil 1 21 - -
Lsi10g00414 356 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Lsi10g00414 356 Coils Coil 186 213 - -
Lsi10g00414 356 MobiDBLite consensus disorder prediction 265 285 - -
Lsi10g00414 356 ProSiteProfiles Src homology 3 (SH3) domain profile. 287 346 IPR001452 GO:0005515
Lsi10g00414 356 PANTHER SH3 DOMAIN-CONTAINING 292 356 - -
Lsi10g00414 356 Coils Coil 220 240 - -
Lsi10g00414 356 Gene3D SH3 Domains 290 344 - -
Lsi10g00414 356 PANTHER PROTEIN, PUTATIVE-RELATED 1 289 - -
Lsi10g00414 356 SUPERFAMILY SH3-domain 267 344 IPR036028 GO:0005515
Lsi10g00414 356 PANTHER PROTEIN, PUTATIVE-RELATED 292 356 - -
Lsi10g00414 356 Coils Coil 149 169 - -
Lsi10g00414 356 MobiDBLite consensus disorder prediction 266 283 - -
Lsi10g00414 356 SMART SH3_2 290 345 IPR001452 GO:0005515
Lsi10g00414 356 Pfam Variant SH3 domain 294 342 IPR001452 GO:0005515
Lsi10g00414 356 Gene3D Arfaptin homology (AH) domain/BAR domain 44 261 IPR027267 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00414 - - - bhj:120087629 670.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00852 Lsi-Chr2:8000970 Lsi10g00414 Lsi-Chr10:6279900 6.72E-128 dispersed
Lsi04g01860 Lsi-Chr4:25726729 Lsi10g00414 Lsi-Chr10:6279900 2.44E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00414 Lsi_Chr10 FPKM 0.962017 0.389687 2.249433 3.358153 22.299595 22.319212 20.30514 0.404561 0.1341 0.386956