Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00420 ATGCGAACTCTTTGCGATATCTGTGAGAGCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCGCTCCTGCGATCAGGAGGTTCACATGTGTAACAAACTTGCTAGGAGACATGTTTGTGTTGGACTGGCTGAACCCCGCGATAGTATCTTTATTCTTCAAACAACGGATGTAGCTTTCTTTTACTGTGATATAGATGGTAGCTCCCTATGCTTGCAATGTGATATGATTGTTCATGTTGGAGGCAAAAGATACCCACTTGAACCGCATGCAAAAGTTCTTCGTGGGTGTAATCTACAACCTGATAAGAGTGTGATGCTTGCAAGATCCTTCAAACAAGAACCTGAAAAAGAATACAAAGTAACTTCCAGTGGAGCTACAGAAAAGACTACAAGCAACTTAATGGCAAATCAAACTCACCCTCACCGGTGTACTTTCCAAGCTGGGCGAGCGAGTTCGATTTGGCTCGTTGAATCAGAGCATCCTGTGCTGCCTTCACATTCTCTGGCCGGCCACCCCATGTCTTCAAGCAGAGCTCTGGCATATGAGAAGGACACATGCCATGGGTTTGGTGCTTGGTTCATGGCGTTCAAGTTCAATGTAGCCTCTACCTCAGATTGCCCACCTGATAAAAACTGTTCCACAACAACAAAAACAACCCAGATTCAGTTCATCATTCATCAAGGAACAGCTGGAGGGATTCTTCTTTGGAGAAGAGACAGAGTGTACTTTGCAACTGTCTCAGGGCTTGCTCTGTCTTTGCTTTCAGCTCCAGGAAAGAAGACCTCTGCCCAAACTTTCTGTGCTACCTCAAAGGTTCTGTCAATTCCGTGCTCTCCGTCCAGCAAGATCTCTGGCTCCACGATTGGAACCAACCCATTGTCCTGCAAATTGCAACACCCCAATCCAAAATCAAAATCAAGGGACCTTAAATCAAATGGGGTTTCCTTAAAAGATAAGGAGTTTGATTTGTTGAGACCTGGGAGACGGCAGCATAGCGAGCAAGTCCCCAGGCAGCTTCCT 1035 47.25 MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHAKVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCTFQAGRASSIWLVESEHPVLPSHSLAGHPMSSSRALAYEKDTCHGFGAWFMAFKFNVASTSDCPPDKNCSTTTKTTQIQFIIHQGTAGGILLWRRDRVYFATVSGLALSLLSAPGKKTSAQTFCATSKVLSIPCSPSSKISGSTIGTNPLSCKLQHPNPKSKSRDLKSNGVSLKDKEFDLLRPGRRQHSEQVPRQLP 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6364840 6368982 - Lsi10G004200.1 Lsi10g00420 671977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00420 345 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lsi10g00420 345 Gene3D Classic Zinc Finger 2 92 - -
Lsi10g00420 345 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 141 - -
Lsi10g00420 345 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi10g00420 345 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 141 - -
Lsi10g00420 345 MobiDBLite consensus disorder prediction 296 345 - -
Lsi10g00420 345 CDD Bbox1_BBX-like 4 43 - -
Lsi10g00420 345 MobiDBLite consensus disorder prediction 306 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00420 - - - csin:114304102 142.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00267 Lsi-Chr7:2909441 Lsi10g00420 Lsi-Chr10:6364840 1.11E-36 dispersed
Lsi10g00420 Lsi-Chr10:6364840 Lsi09g01848 Lsi-Chr9:27319195 1.84E-13 dispersed
Lsi01g00620 Lsi-Chr1:4986878 Lsi10g00420 Lsi-Chr10:6364840 1.07E-37 wgd
Lsi10g00420 Lsi-Chr10:6364840 Lsi11g01136 Lsi-Chr11:19836786 4.90E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1235 . . Lsi10g00420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0064604 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26019 PF00643 zf-B_box 3.40E-05 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00420 Lsi_Chr10 FPKM 0.410325 0.54793 1.586125 1.9538 0.311647 0.461344 0.324529 1.259412 1.186032 1.215648