Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00425 ATGGCGGCCGCCACCACTCTCAATCTCCCTTCTCTCTCTTCTTCATCATCTCTCTCTCACCCCACTCCTTCTCTTCAAACCCCTCTTTCCTTCTCCTCTAAAACCCTTCCAAAATCCCACTTTCCCCATTCCCTCTCCCTTCCCAATACCCACAAACCCCTCTTCCTCGCTTCCGCCTCCAAATCCCCCATCTCGGATTTCTTCTCCGGCGACGACTATTCCGACGACAAACCCCGCGAAGAGTGCGGCGTTGTTGGAATCTATGGCGACCCAGAAGCCTCTCGCCTCTGTTATTTAGCCCTTCACGCTCTCCAGCACCGTGGCCAAGAAGGCGCTGGAATCGTCACCGTCAACGAAAACGTTCTCCAGTCTGTTACCGGTGTCGGTCTCGTCTCTGAAGTCTTCAGTGAAACCAAACTCGATCAATTGCCTGGCGATTCTGCTATTGGTCATGTTCGTTACTCCACTGCTGGATCTTCTATGCTTAAGAATGTTCAACCTTTTGTTGCTGGATATCGATTTGGCTCTGTTGGGGTTGCTCATAATGGTAATTTAGTTAATTATCGTACTCTTAGAGCTAAACTTGAAGATACTGGTTCTATTTTCAATACTAGTTCTGATACTGAGGTTGTTCTTCACCTTATTGCGATTTCTAAACATAGACCTTTCTTGTTGAGGATTGTGGATGCTTGTGAACAGCTTGAAGGAGCTTATTCTATGGTTTTTATTACTGAAGATAAATTGGTTGCTGTTCGTGATCCTTTTGGTTTTAGGCCTTTGGTTATGGGTAGGAGAAGTAATGGGGCTGTTGTATTTGCTTCTGAAACTTGTGCTCTTGATTTAATTGAAGCCACATATGAGAGAGAAGTGTTTCCTGGGGAAGTTTTAGTAGTTGATAAGAATGGGATTCAATCCCTCTGTCTAATGGCTCATCCTCAGCCTAAATCTTGCATATTTGAACACATATACTTTGCTCTTCCCAACTCGGTTGTTTTCGGCCGTTCTGTCTACGAATCCCGCCGAGCATTTGGAGAGATACTCGCCACTGAAGCCCCTGTCGATTGTGATGTTGTGATTGCTGTCCCGGATTCAGGAGTAGTGGCTGCTCTTGGATATGCAGCTAAAGCTGGGGTAGCTTTCCAACAAGGTCTCATAAGGTCTCATTACGTCGGGAGGACATTCATCGAGCCATCGCAGAAGATTCGTGACTTTGGTGTGAAGCTGAAGCTGTCGCCGGTTCGTGCAGTGTTGGAAGGGAAGAGAGTAGTGGTTGTGGATGATTCAATTGTTAGAGGCACTACATCTTCAAAGATTGTGAGGCTGTTAAAGGAAGCAGGAGCAAAAGAAGTGCATATGAGGATAGCTTGCCCTCCAATTATAGGGTCATGTTATTATGGAGTGGACACACCAAGTTCTGAAGAACTAATCTCCAACAGAATGAGTGTGGAGGAAATAAGGGAATTTATAGGGTCTGATTCACTTGCTTTTCTGCCATTTGATAGCTTGAAGAAGCTTTTGGGAAGTGATTCTCCAAACTTTTGCTATGCTTGCTTTTCAGGGAACTACCCAGTTGAGCCTAGAGAACTAAAAGTGAAAAGGGTGGGAGATTTTGTGGATGATGGGTTGAATGGAAGCTTGGAATCCATTGATGGAGGATGGGTTCAAGCTAACAGAAACCAGAATCTTGATAATAATCTCACAGTGGAGAAAGTTGGAGGTCTCTGA 1725 45.22 MAAATTLNLPSLSSSSSLSHPTPSLQTPLSFSSKTLPKSHFPHSLSLPNTHKPLFLASASKSPISDFFSGDDYSDDKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVNENVLQSVTGVGLVSEVFSETKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRTLRAKLEDTGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIACPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFDSLKKLLGSDSPNFCYACFSGNYPVEPRELKVKRVGDFVDDGLNGSLESIDGGWVQANRNQNLDNNLTVEKVGGL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6445421 6447145 - Lsi10G004250.1 Lsi10g00425 671982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00425 574 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 82 305 IPR029055 -
Lsi10g00425 574 CDD PRTases_typeI 344 455 IPR000836 -
Lsi10g00425 574 CDD GPATase_N 82 332 IPR035584 -
Lsi10g00425 574 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 82 301 IPR017932 -
Lsi10g00425 574 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 82 523 IPR029055 -
Lsi10g00425 574 Hamap Amidophosphoribosyltransferase [purF]. 81 522 IPR005854 GO:0004044|GO:0009113
Lsi10g00425 574 Pfam Glutamine amidotransferase domain 162 279 IPR017932 -
Lsi10g00425 574 SUPERFAMILY PRTase-like 317 528 IPR029057 -
Lsi10g00425 574 MobiDBLite consensus disorder prediction 1 31 - -
Lsi10g00425 574 Pfam Phosphoribosyl transferase domain 340 452 IPR000836 -
Lsi10g00425 574 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 26 554 - -
Lsi10g00425 574 Gene3D - 341 505 IPR029057 -
Lsi10g00425 574 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 26 554 - -
Lsi10g00425 574 TIGRFAM purF: amidophosphoribosyltransferase 82 523 IPR005854 GO:0004044|GO:0009113
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00425 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 1043.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi10g00425 . 71 555 PRT Gene Family AT2G16570 85.2 1.6e-242 835.5
Lsi10g00425 . 71 555 PRT Gene Family AT4G34740 86.2 1.5e-243 839.0
Lsi10g00425 . 28 528 PRT Gene Family AT4G38880 70.9 9.5e-200 693.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi09g00406 . 6 104 PRT Gene Family AT4G22570 82.8 5.0e-44 173.7
Lsi07g01320 . 1 95 PRT Gene Family AT4G22570 87.5 1.1e-43 172.6
Lsi08g01520 . 83 174 PRT Gene Family AT4G22570 82.6 4.4e-40 160.6
Lsi08g01213 . 11 100 PRT Gene Family AT4G22570 78.9 2.0e-37 151.8
Lsi09g00406 . 1 96 PRT Gene Family AT4G12440 84.4 8.1e-41 162.9
Lsi07g01320 . 1 95 PRT Gene Family AT4G12440 85.3 2.4e-40 161.4
Lsi08g01520 . 78 173 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Lsi08g01213 . 4 99 PRT Gene Family AT4G12440 78.1 3.2e-37 151.0
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g00585 . 1 190 PRT Gene Family AT1G71750 64.2 1.9e-68 255.8
Lsi02g01799 . 15 467 PRT Gene Family AT1G55810 85.2 1.2e-224 775.8
Lsi05g00389 . 10 414 PRT Gene Family AT1G55810 67.6 1.3e-162 569.7
Lsi02g01799 . 64 479 PRT Gene Family AT3G27440 75.5 1.2e-184 642.9
Lsi05g00389 . 30 414 PRT Gene Family AT3G27440 64.5 9.5e-147 516.9
Lsi02g01799 . 11 466 PRT Gene Family AT3G27190 74.9 3.6e-206 714.5
Lsi05g00389 . 4 414 PRT Gene Family AT3G27190 75.7 4.3e-191 664.5
Lsi01g01465 . 4 350 PRT Gene Family AT3G53900 52.1 2.3e-86 315.8
Lsi02g01799 . 1 467 PRT Gene Family AT4G26510 83.9 1.7e-229 792.0
Lsi05g00389 . 3 414 PRT Gene Family AT4G26510 68.6 8.1e-171 597.0
Lsi02g01799 . 11 469 PRT Gene Family AT5G40870 73.8 6.8e-205 710.3
Lsi05g00389 . 4 414 PRT Gene Family AT5G40870 77.1 4.6e-193 671.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00425 Lsi_Chr10 FPKM 12.99615 12.703214 7.405949 6.400117 13.736128 14.625279 14.056305 4.929446 5.580089 4.946633